Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq45459 98.7 2e-15 seq4998 98.7 2e-15 seq2764 93.3 9e-14 seq47501 87.8 4e-12 >seq45459 Length=4245 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 || ||||||| |||| || ||||| ||||| | |||| | |||||| || ||||| Sbjct 3301 CACCTTGTTCACCAGTTTCGAGTAAAGGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTC 3242 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| || | |||||| || | || || |||||||| | ||| || ||| ||||||| Sbjct 3241 GCGGGAAATAAGCTCGTTTGAGAAACAGAGACCAGGCATGAGCCCTCGCTTCTTGAGCCA 3182 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| ||||| |||||||| ||| | | |||||||| Sbjct 3181 GAAGATGGCGCAGAAGGATCCGCTGAAGAAAATGCCCTCGAC 3140 >seq4998 Length=959 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 || ||||||| |||| || ||||| ||||| | |||| | |||||| || ||||| Sbjct 424 CACCTTGTTCACCAGTTTCGAGTAAAGGAGACAGGCAAAGTCGCAGTGCAGTCCTTCGTC 483 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| || | |||||| || | || || |||||||| | ||| || ||| ||||||| Sbjct 484 GCGGGAAATAAGCTCGTTTGAGAAACAGAGACCAGGCATGAGCCCTCGCTTCTTGAGCCA 543 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| ||||| |||||||| ||| | | |||||||| Sbjct 544 GAAGATGGCGCAGAAGGATCCGCTGAAGAAAATGCCCTCGAC 585 >seq2764 Length=7933 Score = 93.3 bits (102), Expect = 9e-14 Identities = 488/761 (64%), Gaps = 30/761 (4%) Strand=Plus/Plus Query 251659 ATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA 251718 || || || ||||||||||| | ||| || ||||| || | || ||||| || |||| Sbjct 3824 ATACGATCCGCCACAAACTCGATATATTGGCCCATGAGGCCTGAATTCATCCCGATCAAG 3883 Query 251719 C-GACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT 251777 | ||| |||| || || |||||||| ||||||| | ||||| || | || Sbjct 3884 CTGAC-GGGAAGCGCATCGCAGATGAAGCTCTTTTCGACATCTACTGCTTCTCTTATTAT 3942 Query 251778 TGCCTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAA 251836 || | || || | | ||||||||| | || || || ||||| | | || ||| Sbjct 3943 GCGATTGATATGCTCCTGCGTCAGCTTGTTTTTGAGTTTGGAATACAGCTGACACG-CAA 4001 Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896 | ||||| |||||||| |||||||| | ||| || || | || ||||||| Sbjct 4002 ATGAGCAGTGCAACCCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCA 4061 Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956 | | || || ||| | |||||||| || || || ||||| || ||||| | | |||| Sbjct 4062 TGAGACCCCGCTTCTTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCT 4121 Query 251957 CGACACACACCCATGCAACAAGGCGCTCAGCAAA---CGACTTG-TCCTGCGACAAGAAC 252012 | ||| | | || | || | ||| || || || ||| ||| ||| | || Sbjct 4122 CAACAGTAGCGAAGGCGATTAGCCTCTCGGCGAAAGTCGCGTTGCTCC--CGATA--TAC 4177 Query 252013 TTCTGTGCCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGA 252072 ||||| |||||| |||||| | | || || | | |||| ||| | || | | Sbjct 4178 TTCTGCGCCCATATCGCCTTCCTCTCGACACTTGGCACGG--TCGAGTGCGCCGAAAACA 4235 Query 252073 -GAGTTCCGCTCGGCATC--GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCC 252129 || ||| ||| | || ||| |||||| || ||| | ||| || || ||| ||||| Sbjct 4236 GGACCTCC-CTCTCCTTCGGGTCGTCGATGTACGAATCGATCAGAAGTGAATACGTCTCC 4294 Query 252130 GAATGGATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTG 252189 |||||| ||| || ||||||| | | ||||| || || || |||| Sbjct 4295 TGGTGGATGCTTTCCATGGCCATCTGGAAGCCGTAGAAGCACCGAGCCTCCGGCACGGTA 4354 Query 252190 ACTTCCGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAG 252249 || ||| || |||| | | | | ||| |||||||| || || || ||| || ||| Sbjct 4355 ACCTCCCTGCAAAACCTCTCCACGAGGTTTTCCATCACGATCCCGTCCGCGCCCGCGAAG 4414 Query 252250 AAGCCAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCG 252309 || |||| | || |||||||| | || || || ||||||| ||||| Sbjct 4415 AACGCAAGGACCATCGATATGAAGTGCCTTTCGTCTGAATTTAGCTTGTTGTTCCAGTGT 4474 Query 252310 G--CAATGTCCTGATTCAGAGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTT 252365 | ||| | | | ||||| | || || |||||||||| | || || || Sbjct 4475 GTCAAATCTGCCG----AGAGGTCGATCTCGTCGGCCGTCCAGAACGAGGCGACGTGCTG 4530 Query 252366 CTTGTACATTGCGAACACA--TCAGGGTACTTGATTGGGAA 252404 |||||||| |||| || | || || |||| |||||||| Sbjct 4531 CTTGTACA--GCGACCAAAGGTCCGGATACTCTATTGGGAA 4569 >seq47501 Length=4302 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 280250 CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACAT 280309 ||| |||||||| |||||| || || || |||||||| |||||||| ||||||||||| Sbjct 3262 CGTCTGGAAGCACCCCAACGCCCGTATCGCCTACGTCGCCCAGCACGCCTTCCACCACAT 3203 Query 280310 CGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 ||||| ||||||| || ||| || || | ||||| Sbjct 3202 CGAGAGCCACCTGAGCAAGACGCCCAATGAGTACAT 3167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027166595160172