Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq18371 95.1 1e-14 seq10981 86.0 5e-12 >seq18371 Length=23815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | ||| || ||||| | ||| ||||| || |||||||||||||| Sbjct 23802 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 23743 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| ||||||||||| || ||| |||| || | |||||| ||||| || Sbjct 23742 AAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGG 23683 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| |||||| || | | |||| |||||| | | ||||| Sbjct 23682 ATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACA 23623 Query 114336 TC 114337 || Sbjct 23622 TC 23621 >seq10981 Length=11828 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | ||| || ||||| | ||| ||||| || |||||||||||||| Sbjct 2402 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 2343 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| |||||||| || || ||| |||| || | |||||| || || || Sbjct 2342 AAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGG 2283 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| |||||| || | | |||| |||||| | | ||||| Sbjct 2282 ATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCGACA 2223 Query 114336 TC 114337 || Sbjct 2222 TC 2221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419873813213904