Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18597 140 8e-28 seq4235 111 4e-19 seq20946 104 6e-17 seq9453 98.7 2e-15 seq18371 96.9 8e-15 seq10981 93.3 1e-13 >seq18597 Length=5183 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| ||||| || | || || || ||||| Sbjct 3114 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAA 3173 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| | ||||| || || || |||||||| |||| || ||||| Sbjct 3174 ATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTCGTCTTGACGTTG 3233 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || |||||||||||||||||||| ||||||||| Sbjct 3234 TCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACG 3293 Query 288463 AATATCTGCA 288472 || ||||||| Sbjct 3294 AAAATCTGCA 3303 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || || || | || || || ||||| Sbjct 2886 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAA 2945 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| | ||||| || || || |||||||| |||| || ||||| Sbjct 2946 ATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTG 3005 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || |||||||||||||||||||| ||||| || Sbjct 3006 TCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACA 3065 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 3066 AAGATCTGCAT 3076 >seq4235 Length=7148 Score = 111 bits (122), Expect = 4e-19 Identities = 257/385 (67%), Gaps = 2/385 (1%) Strand=Plus/Minus Query 72407 TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGAC 72466 |||| | | ||| || || | || |||||||| ||||| || ||||| | |||||| | Sbjct 5742 TCGATTCTACCAGGCATCGACCTCTGAGTTGTACGGAAAGGTCCAAGAGGTCCCTCAGTC 5683 Query 72467 GGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTG 72526 || | || || || || || || ||| |||| ||| |||||| ||| || | || Sbjct 5682 TGAGACCACGCCTTTCTACCCCCGTTCCCCGTACGCTGTGGCAAAGCAGTATGCCTTCTG 5623 Query 72527 GATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAA 72586 |||| | || || |||||| | || ||| | | ||| || |||||| Sbjct 5622 GATCCTTGTGAACTATCGTGAGGCTTACGGAATGCACTTGACGAACGGAATCCTTTTCAA 5563 Query 72587 TCACGAGAGTCCCAACAGAGGC-CATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCG 72645 |||||| || | | || || | ||||| || ||||| || || | | |||| Sbjct 5562 CCACGAGTCCCCTCGCCGTGGAGCAACT-TTCGTCACGCGTAAGATTACCATCGCTGTCG 5504 Query 72646 CGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAG 72705 | ||| | | || | || ||| | ||||||| || || ||||| ||||| | | Sbjct 5503 CACGTATCAGCCAGGGCCTTGAGAAAACCCTGTATCTTGGAAACATAGACGCCAAGCGTG 5444 Query 72706 ATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTC 72765 |||||||| | ||| || ||||| | | |||||| ||||||| ||||| ||| || Sbjct 5443 ATTGGGGACACGCGCGCGACTACGTGAAGGGGATGTGGATGATGCTTCAACATGATGTTC 5384 Query 72766 CGGATGACTATGTGATTGCAACAGG 72790 | |||||||||||| | || ||||| Sbjct 5383 CTGATGACTATGTGCTGGCCACAGG 5359 >seq20946 Length=4204 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 |||| || ||||| || ||||| ||||| || | || || || | ||| |||||| Sbjct 2 TGGACGTTGTAGTCCAAAAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGTGAAAATCAGA 61 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 ||||||||| | ||||| || || | |||||||| ||||| || ||||| | || Sbjct 62 CGCTGTTGATCAGGAGGGATGCCCTCCTCGTCCTGGATCTTCGCCTTGACGTTGTTGATC 121 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || || || || || || ||||| |||| |||||||| ||||||||||| ||| Sbjct 122 GTTTCCGACGGGTCGACGTCAAGGGTGATGATCTTGCCGGTCAGGGTCTTGACGAAAATC 181 Query 288469 TGCAT 288473 ||||| Sbjct 182 TGCAT 186 >seq9453 Length=4450 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || ||||| || ||||| | | Sbjct 1122 CCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 1063 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | || || || ||||||||||||||||||||| ||| Sbjct 1062 AGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGG 1003 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | || | || || Sbjct 1002 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACA 943 Query 288427 TCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || || ||| Sbjct 942 TCGAGGGTGATGGTTTTGCCTGTC 919 >seq18371 Length=23815 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | | || | ||| | ||| ||| || || || || || || Sbjct 23805 TGTCCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCC 23746 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | |||||||| || || | ||||||||| ||||||||||| | ||||||| Sbjct 23745 GATAAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGC 23686 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || | || ||||| || || | ||||| | || Sbjct 23685 GGGATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGCTCG 23626 Query 288424 ACTTCGAGCGTGATCGTC 288441 || ||||||||||||||| Sbjct 23625 ACATCGAGCGTGATCGTC 23608 >seq10981 Length=11828 Score = 93.3 bits (102), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | | || | ||| | ||| ||| || || || || || || Sbjct 2405 TGTCCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCC 2346 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | |||||||| || || | ||| ||||| ||||||||||| | ||||||| ||| Sbjct 2345 GATAAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGA---TCT 2289 Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||| || || || |||||||| || | || ||||| || || | ||||| | Sbjct 2288 GGCGGGATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCAATTGTGTCGCTTGGC 2229 Query 288421 TCTACTTCGAGCGTGATCGTC 288441 || || ||||||||||||||| Sbjct 2228 TCGACATCGAGCGTGATCGTC 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178885201924776