Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4235 111 3e-19 >seq4235 Length=7148 Score = 111 bits (122), Expect = 3e-19 Identities = 257/385 (67%), Gaps = 2/385 (1%) Strand=Plus/Minus Query 68396 TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGAC 68455 |||| | | ||| || || | || |||||||| ||||| || ||||| | |||||| | Sbjct 5742 TCGATTCTACCAGGCATCGACCTCTGAGTTGTACGGAAAGGTCCAAGAGGTCCCTCAGTC 5683 Query 68456 GGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTG 68515 || | || || || || || || ||| |||| ||| |||||| ||| || | || Sbjct 5682 TGAGACCACGCCTTTCTACCCCCGTTCCCCGTACGCTGTGGCAAAGCAGTATGCCTTCTG 5623 Query 68516 GATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAA 68575 |||| | || || |||||| | || ||| | | ||| || |||||| Sbjct 5622 GATCCTTGTGAACTATCGTGAGGCTTACGGAATGCACTTGACGAACGGAATCCTTTTCAA 5563 Query 68576 TCACGAGAGTCCCAACAGAGGC-CATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCG 68634 |||||| || | | || || | ||||| || ||||| || || | | |||| Sbjct 5562 CCACGAGTCCCCTCGCCGTGGAGCAACT-TTCGTCACGCGTAAGATTACCATCGCTGTCG 5504 Query 68635 CGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAG 68694 | ||| | | || | || ||| | ||||||| || || ||||| ||||| | | Sbjct 5503 CACGTATCAGCCAGGGCCTTGAGAAAACCCTGTATCTTGGAAACATAGACGCCAAGCGTG 5444 Query 68695 ATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTC 68754 |||||||| | ||| || ||||| | | |||||| ||||||| ||||| ||| || Sbjct 5443 ATTGGGGACACGCGCGCGACTACGTGAAGGGGATGTGGATGATGCTTCAACATGATGTTC 5384 Query 68755 CGGATGACTATGTGATTGCAACAGG 68779 | |||||||||||| | || ||||| Sbjct 5383 CTGATGACTATGTGCTGGCCACAGG 5359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102160862960200