Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2764 127 2e-24 seq48315 125 9e-24 seq45459 114 2e-20 seq4998 114 2e-20 seq34148 105 8e-18 seq50892 91.5 2e-13 seq43102 91.5 2e-13 seq2697 87.8 2e-12 seq40427 82.4 9e-11 seq24680 82.4 9e-11 seq14466 82.4 9e-11 >seq2764 Length=7933 Score = 127 bits (140), Expect = 2e-24 Identities = 203/289 (70%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||| || |||||||||||| ||||| |||||||||||||||||| Sbjct 4016 CCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCATGAGACCCCGCTTC 4075 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| |||||| || ||||| || || ||||||||||| || ||||| ||| ||||| Sbjct 4076 TTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCTCAACAGTAGCGAAG 4135 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || | ||| || || | |||| || | | | ||||| |||||| | Sbjct 4136 GCGATTAGCCTCTCGGCGAAAG-TCGCG--TTGCTCCCGATATACTTCTGCGCCCATATC 4192 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 126304 ||||| |||||| || || |||||| | ||| ||| || ||| | | || Sbjct 4193 GCCTTCCTCTCGACACTTGGCACGGTCGAGTGCGCCGAAAACAGGACCTCCCTCTCCTTC 4252 Query 126305 GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGA 126353 || || | ||||||| ||| || || |||||| || || ||||| Sbjct 4253 GGGTCGTCGATGTACGAATCGATCAGAAGTGAATACGTCTCCTGGTGGA 4301 >seq48315 Length=10477 Score = 125 bits (138), Expect = 9e-24 Identities = 294/437 (67%), Gaps = 19/437 (4%) Strand=Plus/Minus Query 114799 CTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTC 114858 || |||||| ||||| ||||||||||| || |||| || |||| || | ||| | Sbjct 2259 CTCCATGAACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTC--GC---CCTCTCC 2205 Query 114859 ATC-----CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 114913 ||| ||| || || | | || | ||| | | ||| |||||||||||||| Sbjct 2204 ATCTCGTTCCCGTGGTTCTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGC 2145 Query 114914 TCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCT 114970 || | |||| ||||||| || ||||| | | || |||||| || |||| ||| Sbjct 2144 TCGATGTACGCCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCC 2085 Query 114971 GTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGA 115030 ||| || || ||||| ||||| || | ||| || | || ||| || || ||||| Sbjct 2084 GTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGG 2025 Query 115031 AT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACT 115088 || |||| | | || | ||| | |||| || || || ||||| || ||| Sbjct 2024 ATGTACGACGCGGAC--GCGCGGACGTTCGAGATGGACAGGCCGATCCCCCCCGCGTACT 1967 Query 115089 TTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCA-CCCTTA 115147 | ||| |||||| | | |||| || |||| || |||||||| ||||| |||| | Sbjct 1966 TGCTGATGACCGCGCAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTCCCTGA 1907 Query 115148 TTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 115207 || | ||||||||||||||||| || || | || || || |||||||| || || Sbjct 1906 CGCACG-TCAGGAAGCAGCTCGACATCTGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTG 1848 Query 115208 GGTGTCGCGTGGATGAA 115224 || || |||||| |||| Sbjct 1847 GGCGTGGCGTGGGTGAA 1831 >seq45459 Length=4245 Score = 114 bits (126), Expect = 2e-20 Identities = 234/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || || ||||| ||||| || || || || ||||| || || || Sbjct 3268 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACC 3209 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || || || || || || |||||| || Sbjct 3208 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAAAT 3149 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAA 126224 ||||| || ||||| || | | ||||| || || ||| || | | ||| Sbjct 3148 GCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAG-GCATGTCGCGAGTCGC 3090 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 ||||||| | ||||| | ||||||||||| | ||||| ||||||| ||| || | | Sbjct 3089 ACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTGA 3030 Query 126285 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 126344 ||| | | |||| || | | || || ||||| | || || || ||||| || | Sbjct 3029 GGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGTCT 2970 Query 126345 CGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAA 126385 | | ||| | ||||| | |||| ||| | |||||||| Sbjct 2969 CACTGTGAATGTTTTCA--ACGGCAATTTGAAATCCGTAGAAA 2929 >seq4998 Length=959 Score = 114 bits (126), Expect = 2e-20 Identities = 234/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || || ||||| ||||| || || || || ||||| || || || Sbjct 457 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACC 516 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || || || || || || |||||| || Sbjct 517 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAAAT 576 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAA 126224 ||||| || ||||| || | | ||||| || || ||| || | | ||| Sbjct 577 GCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAG-GCATGTCGCGAGTCGC 635 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 126284 ||||||| | ||||| | ||||||||||| | ||||| ||||||| ||| || | | Sbjct 636 ACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTGA 695 Query 126285 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 126344 ||| | | |||| || | | || || ||||| | || || || ||||| || | Sbjct 696 GGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGTCT 755 Query 126345 CGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAA 126385 | | ||| | ||||| | |||| ||| | |||||||| Sbjct 756 CACTGTGAATGTTTTCA--ACGGCAATTTGAAATCCGTAGAAA 796 >seq34148 Length=11268 Score = 105 bits (116), Expect = 8e-18 Identities = 251/375 (67%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||||||| || || || || || ||||| || ||||| | ||| ||||| |||| | Sbjct 2068 ACGGTGATCTTGCGGTCGAATCGGCCGGGGCGTAGAAGGGCCTGGTCGAGGATGTCAACG 2127 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 ||||| || || |||||| | ||| || | | | || || || ||||||||| Sbjct 2128 CGGTTGGTAGCGGCGATGGTGATGATTCCGGGGTTGCCGTCGAAACCGTCCATCTCAACA 2187 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGC 10952 | || || || ||||| || || || || || || ||| ||| | || |||| | Sbjct 2188 AGGATCTGGTTAATGGTCTGCTCACGCTCGTCGTTACCGCCGGCGAA--TCCGGCACCAC 2245 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGG 11012 | || || || ||||| || ||||||||||||| ||| || || || | || Sbjct 2246 GCTGGCGTCCTACAGCGTCGATCTCATCGATGAAAATGATGCAGGGGGCGTTCTTCTTGG 2305 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | ||| || || ||||| | | || || ||||| || ||||| || || || | Sbjct 2306 CCTGGGAAAATATGTCACGGACACGGCTAGCTCCAACACCAACGAACATCTCGACGAACT 2365 Query 11073 TGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 11131 || | | | |||| ||||| ||||| | || || || | ||| ||||||| Sbjct 2366 CGGAACCAG-AGATTGAAATGAAAGGGACTCCTGCCTCGCCAGCAACGGCCTTGGCGAGG 2424 Query 11132 AGGGTCTTCCCCGTC 11146 |||||||| || ||| Sbjct 2425 AGGGTCTTACCTGTC 2439 >seq50892 Length=141790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| || || || |||||||| | ||||| || |||||||| || | Sbjct 2132 AAAACCATCCATTTCTGTTAATAGTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACC 2073 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | |||| |||| |||| |||| ||||| ||||||||||| || ||||| ||||| Sbjct 2072 ACCAACACCAGCACCACGTTCTCTACCTACGGCATCAATTTCATCAATAAAAACAATACA 2013 Query 10996 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCAC 11055 || |||||| || || || | |||||| |||| ||||| | || | Sbjct 2012 AGGCGCATTTTCTGAAGCCTTTTGGAATAAATCTCGAACTCGGGCAGCACCAATCCCGAT 1953 Query 11056 AAACATTTCCACAAA 11070 |||||| |||||||| Sbjct 1952 AAACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| || || || |||||||| | ||||| || |||||||| || | Sbjct 8877 AAAACCATCCATTTCTGTTAATAGTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACC 8936 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | |||| |||| |||| |||| ||||| ||||||||||| || ||||| ||||| Sbjct 8937 ACCAACACCAGCACCACGTTCTCTACCTACGGCATCAATTTCATCAATAAAAACAATACA 8996 Query 10996 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCAC 11055 || |||||| || || || | |||||| |||| ||||| | || | Sbjct 8997 AGGCGCATTTTCTGAAGCCTTTTGGAATAAATCTCGAACTCGGGCAGCACCAATCCCGAT 9056 Query 11056 AAACATTTCCACAAA 11070 |||||| |||||||| Sbjct 9057 AAACATCTCCACAAA 9071 >seq2697 Length=14000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 171911 TTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTGTTT 171970 ||||| ||||| |||| || ||||||||||| | || | ||| || ||||| ||||| Sbjct 10469 TTGCCTCCCATTCGACGGGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTTC 10528 Query 171971 GAACCCATGTAGTCATTGGCCAACTTGACAAT---CGTATCCGCGAGGGAGACTTCACCG 172027 || || |||| ||||| | | || |||| ||| | | || | ||| ||| Sbjct 10529 GATCCGCAGTAG-GATTGGGC--CATGCCAATGACCGTGCCATTCAATGACATTTCCCCG 10585 Query 172028 TGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCC 172087 || || || ||||| | ||| | | || | || | ||| || ||||| ||||| | Sbjct 10586 TGGTGATACGCCGAATGTTCCCCAATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 10645 Query 172088 TTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCG 172147 || | ||||| | ||| |||||| ||| |||||| | ||| || || ||||| || || Sbjct 10646 TTCAATTTCTTCTTGAAACACGCAAACAAGACCTTGCGCTGAGAGGGTTTGAGCCCATCC 10705 Query 172148 GCCATGTGCGCGATGGAACG 172167 ||||| | ||| || || Sbjct 10706 ATAATGTGTGGGATCGATCG 10725 >seq40427 Length=10030 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 171911 TTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTGTTT 171970 ||||| ||||| |||| || ||||||||||| | || | ||| || ||||| |||||| Sbjct 4897 TTGCCTCCCATTCGACGAGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTTT 4956 Query 171971 GAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT--TCACCGT 172028 | || | ||||| | |||| || || || | | || | |||| || |||| Sbjct 4957 GTGCCAACGTAGTTCTGTGCCATTCCGATGATAGT-TGAGTGA-AGCGACTGCTCTCCGT 5014 Query 172029 GATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCCT 172088 | || || ||||| | || ||| || | || | ||| || ||||| ||||| | | Sbjct 5015 GGTGATACGCCGAGTGCTCTCCGATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTTT 5074 Query 172089 TGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 | | ||||| | ||| || ||| ||| |||||| | |||||| | ||||| || || Sbjct 5075 TCAATTTCTTCTTGAAACATGCAAACAAGACCTTGCGCTGTGACGTTTTGAGACCATC 5132 >seq24680 Length=7660 Score = 82.4 bits (90), Expect = 9e-11 Identities = 207/306 (68%), Gaps = 9/306 (3%) Strand=Plus/Minus Query 10765 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAG 10824 ||| ||| ||||||||||| || || || ||||| || | ||||| | ||| || Sbjct 1076 GGGCAGGTCCACGGTGATCTGCCGGTCGAACCGACCCGGCCTCGTCAGGGCCTTGTCGAG 1017 Query 10825 GATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC-TCGTTATCAAAGCCAT 10883 ||| || | |||||| ||| |||| | ||| || | ||||||| || | ||||| | Sbjct 1016 GATGTCGACGCGGTTGGTCCCCGCCAGGACGACCACGCCCGTCGACGACGT-GAAGCCGT 958 Query 10884 CCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG--GCAT 10938 ||||||| | | || | || || | || | || || || || || ||| | | || Sbjct 957 CCATCTC-GACGAGCATCTGGTTCAGCGTGTTCTCCCGCTCGTCGTTGCCGCCGCCGAAT 899 Query 10939 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG 10998 || |||| | ||| ||| | ||||||||||| || || |||||||| || || || || Sbjct 898 CCCCCCCG-TCCGCGCTGCCTCCCGACGGCGTCGATCTCGTCGATGAAGACTATGCAGGG 840 Query 10999 TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAA 11058 || | ||||| | | |||| || || |||| | | ||||| || || || Sbjct 839 GGCGTTGGCGCGGGCCTCCTTGAAGAGGTCGCGCACTCGCGACGGTCCGACGCCGACGAA 780 Query 11059 CATTTC 11064 |||||| Sbjct 779 CATTTC 774 >seq14466 Length=1393 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 171911 TTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTGTTT 171970 ||||| ||||| |||| || ||||||||||| | || | ||| || ||||| |||||| Sbjct 72 TTGCCTCCCATTCGACGAGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTTT 131 Query 171971 GAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT--TCACCGT 172028 | || | ||||| | |||| || || || | | || | |||| || |||| Sbjct 132 GTGCCAACGTAGTTCTGTGCCATTCCGATGATAGT-TGAGTGA-AGCGACTGCTCTCCGT 189 Query 172029 GATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCCT 172088 | || || ||||| | || ||| || | || | ||| || ||||| ||||| | | Sbjct 190 GGTGATACGCCGAGTGCTCTCCGATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTTT 249 Query 172089 TGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 | | ||||| | ||| || ||| ||| |||||| | |||||| | ||||| || || Sbjct 250 TCAATTTCTTCTTGAAACATGCAAACAAGACCTTGCGCTGTGACGTTTTGAGACCATC 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596973593507360