Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq48315 322 5e-83 seq24354 102 8e-17 >seq48315 Length=10477 Score = 322 bits (356), Expect = 5e-83 Identities = 439/609 (72%), Gaps = 14/609 (2%) Strand=Plus/Plus Query 93720 CGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGT 93779 ||| ||||| | |||||| || || |||||||| ||||| ||||||||| | ||| | | Sbjct 1668 CGACTACTTCGGCTTCAAGACCCTCGAGAAGTCCTACCTGCTCAAGATGCACGGCCAGAT 1727 Query 93780 TTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACAT 93839 ||||||| || || || || || ||||||||||| ||||||| ||| |||||| Sbjct 1728 CGCCGAGCGTCCCCAGCACCTCCTCATGCGCGTCGCGGTCGGGATACACATGGGCGACAT 1787 Query 93840 GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTAT---ACCATGGCCAC 93896 || || | | | | || || | | | || ||| ||| ||||| Sbjct 1788 CGAGAGGGTCCTCGAGACGTACA---ACCTCCTCAGCCAGCGGTTCTTCACCCACGCCAC 1844 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 || || ||||||||||| ||||| || || |||||||| || ||||||| | Sbjct 1845 GCCCACGCTGTTCAACGCCGGGACGCCCAACCCGCAGATGTCGAGCTGCTTCCTGACGTG 1904 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 || || ||||||||| ||| || | ||||| |||||| |||| ||| |||| Sbjct 1905 CGTCAGGGAGGACTCCATCGACGGCATATACGACACGCTCAAGAACTGCGCGGTCATCAG 1964 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCA---CGA-CGTACGTGCCAGGGGTTCCT 94072 || ||||||||||| ||||| | ||||| ||| ||| || || | || | Sbjct 1965 CAAGTACGCGGGGGGGATCGGCCT----GTCCATCTCGAACGTCCGCGCGTCCGCGTCGT 2020 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 ||||||| || || || ||||| ||||||||| |||| || |||||||| |||||||||| Sbjct 2021 ACATCCGGGGCACGAACGGCACGTCCAACGGCATCGTGCCCATGCTCCGCGTCTTCAACA 2080 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || ||||||| ||||| |||||||| || |||| ||||||||| || |||||| || Sbjct 2081 ACACGGCGCGGTACGTCGACCAGGGGGGCGGGAAGAGGAAGGGATCGATCGCGGCGTACA 2140 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||||||| | || ||| ||||||| | ||||||||||| |||| Sbjct 2141 TCGAGCCGTGGCACGCGGACATCTTCGCCTTCCTCGACCTTAGGAAGAACCACGGGAACG 2200 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | |||||||||| || ||||| |||||||| |||||| | || ||||| || ||| | Sbjct 2201 AGATGGAGAGGGCGAGGGACCTGTTCTACGCGCTCTGGATCCCGGACCTGTTCATGGAGA 2260 Query 94313 GCGTCGAGA 94321 | ||| ||| Sbjct 2261 GGGTCCAGA 2269 Score = 201 bits (222), Expect = 1e-46 Identities = 281/389 (72%), Gaps = 34/389 (9%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAA 94538 ||||| ||||| || ||||||||||| | | |||||| | ||| ||||| |||||| || Sbjct 2529 CAGGTCGAGACCGGCACGCCCTACATGCTCTACAAGGACCACTG-CAACGGCAAGTCGAA 2587 Query 94539 CCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 ||||||| ||||||| ||||||| |||| || || |||||||||||||||||||| || Sbjct 2588 CCAGCAGAACCTCGGCACGATCAAGTGCTCCAACCTCTGCACCGAGATTGTCGAGTACAC 2647 Query 94599 TTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCG 94658 | || |||||||| || || || ||||||| |||||| ||| |||| ||||| Sbjct 2648 GTGCCCCGACGAGATCGCCGTTTGCAACCTGGCGTCCATCTCCCTCTCCAAGTTCGT--- 2704 Query 94659 AGATGCCTACACGTCTACTGCTTCG--------------TTCGATCTGGAGGAGCTTGTG 94704 | ||| || | || | |||| ||||| || || |||| || Sbjct 2705 -CACGCC----CGCCGACGGGTTCGGGGGGGACGCGAGCTTCGACCTCGACCAGCTCATG 2759 Query 94705 AACTTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTAC 94761 || || | ||||| |||| ||||||||||||||| |||||||| ||||||||| Sbjct 2760 TACATCTC--GAAGG-TGGTGACGAAGAACCTGAACAGGGTCATCGACAACAACTTCTAC 2816 Query 94762 CCCGTCCCGGAGGC--GGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCC 94819 |||||| |||||| |||| | | ||| | ||| || |||||||| ||||| || | Sbjct 2817 CCCGTCGAGGAGGCGAGGAGGAGCAACACC--AGGCACCGTCCCATCGGGATCGGGGTGC 2874 Query 94820 AGGGTTTCGCGGACGCGCTGGTGATGATG 94848 |||| | ||||||||| | ||||||| Sbjct 2875 AGGGACTGGCGGACGCGTTCCAGATGATG 2903 Score = 131 bits (144), Expect = 2e-25 Identities = 249/368 (68%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 95191 GTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTG 95250 || ||||||||||| ||| ||||| | |||||||||||||| || ||||| ||| | Sbjct 3429 GTCCTCGCCGGGGAGTTCACCGTCGTGAACAAGCACCTCCTCCGCGACCTCACGGCCAAC 3488 Query 95251 GGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAAC 95310 || ||| || ||| ||| | | | || | ||||||| |||||||| Sbjct 3489 GGCTACTGGACCGAGCGCGTCCGCAACAAGATCATCGCCGACGGCGGCTCCATCCAGAAC 3548 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 ||| | || | || |||| || || |||||||||| || ||||||||||| ||| Sbjct 3549 GTCCAGGAACTCCCCAAGGAGATACGGGACATCTACAAGACGGTTTGGGAGATCCCCCAG 3608 Query 95371 CGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNN 95430 |||| || |||||| || |||| ||| || ||||||| |||||||| Sbjct 3609 CGCGCCATCCTCGACATGGCCGCCGACCGAGGCGCCTTCATTTGCCAGAGCCAGAGCATG 3668 Query 95431 NNNNNNNNNATGGCCGAGCCCAGTCGCG-GAAAAATAACGTCCATGTTGTTCTACGGGTG 95489 || | |||||| | | || | || | ||| |||| ||||||| ||| Sbjct 3669 AACGTGCACATCGGCGAGCCGA-ACACGAGCAAGCTGACGAGCATGCACTTCTACGCGTG 3727 Query 95490 G-AGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCA 95548 | |||||||| |||||||| || ||||| || | | || ||||| ||||| ||| ||| Sbjct 3728 GAAGAAAGGG-CTCAAGACGGGGATGTACTACCTCAGGACGAGGCCCAAGGCCGACGCCA 3786 Query 95549 TACAGTTC 95556 | |||||| Sbjct 3787 TCCAGTTC 3794 >seq24354 Length=8886 Score = 102 bits (112), Expect = 8e-17 Identities = 181/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 94057 CGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATG 94116 ||||| |||||| | | |||| || ||| || ||| ||||| ||||| || ||| Sbjct 6664 CGTGCAAGGGGTACATTCATCAAAGGGACCCGGGGTGTCTCGAACGGTCTCGTTCCCATG 6723 Query 94117 CTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGT 94176 ||||| |||||| || || | | || || || |||||||| |||| | | || Sbjct 6724 CTCCGAGTCTTCGACTCGACGTCACATTATGTCGATCAGGGTGGCGGGAAGCGCCCCGGC 6783 Query 94177 TCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGA 94236 | ||||| | || ||||||| |||||||| ||| | | | || |||| ||| Sbjct 6784 GCCTTCGCCATATACGTCGAGCCGTGGCACGCCGACATTTTCGACGTGCTCAACCTCCGA 6843 Query 94237 AAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCA 94296 || ||||| || || || | || | || || | || ||||||| | ||||| || Sbjct 6844 AAAAACCATGGAAAGGAGGAGCAGCGCGCAAGGAATCTGTTCTACGGGTTATGGGTCCCC 6903 Query 94297 GACCTTTTTATGAAACGCGTCGAG 94320 ||||| || ||||||||||||||| Sbjct 6904 GACCTCTTCATGAAACGCGTCGAG 6927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494408481836320