Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq48315 168 7e-37 seq24354 147 2e-30 seq45459 96.9 3e-15 seq4998 96.9 3e-15 seq18597 86.0 6e-12 >seq48315 Length=10477 Score = 168 bits (186), Expect = 7e-37 Identities = 502/763 (66%), Gaps = 25/763 (3%) Strand=Plus/Minus Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGG 153872 |||||| |||||| |||||| || || |||||| |||| |||| | |||| Sbjct 2372 CCCTCGGCCTCGTACTTCTCGTAGAGCGCCTTGAACTCGGCGCCCCAGCACGTGTCGAGC 2313 Query 153873 CCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATG 153932 || |||| | ||| ||||| |||| ||| ||| | | ||| | |||| Sbjct 2312 CCCTTGCACTCGTTCGGGCACATGAGCGTCCAGTCCCCGTTCGTCTGGACCCTCTCCATG 2253 Query 153933 AACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTG-CAATCCTCCGCGCC 153991 ||||| ||||| | |||||||||||| | ||||| | |||| | | ||| || || Sbjct 2252 AACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTCGCCCTCTCCATCT--CGTTCC 2195 Query 153992 CATGTTGCGTT-TCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGA 154050 | || | | | | || | ||| | | ||||||| |||||||| || || ||||| Sbjct 2194 CGTGGTTCTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGCTCGATGTACG 2135 Query 154051 CGGCCAGGGCACCTTTACGCTTTCCGCCC---TGATCGACGTGGCGCACCATATTGTTGA 154107 | || | | || || | ||| |||||| || ||||||| ||| || | ||||||| Sbjct 2134 CCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGTTGA 2075 Query 154108 AGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT----CGAATTGATCTTG 154163 ||||||| | |||||| | | |||| | | |||||||| || || || | | Sbjct 2074 AGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGGATGTACGACG 2015 Query 154164 CTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATG 154223 | | |||| | || | |||| || | ||| || || || ||||||| ||| Sbjct 2014 CGGACGCGCGGACGTTCGAGATGGAC----AGGCCGATCCCCCCCGCGTACTTGCTGATG 1959 Query 154224 GCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGC-CG-- 154280 | ||||||| ||||| ||| |||||||||||| || || | ||||| || Sbjct 1958 ACCGCGCAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTCCCTGACGCACGTC 1899 Query 154281 AGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTC 154340 || ||| | | || |||| ||||| || |||| || || || || ||||| | Sbjct 1898 AGGAAGCAGCTCG---ACATCTGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTG 1842 Query 154341 GCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCA 154400 ||||| || || | ||||| | | | |||||| |||| | | ||||| || Sbjct 1841 GCGTGGGTGAAGAACCGCTGGCTGAGGAGGTTGTACGTCTCGAGGACCCTCTCGATGTCG 1782 Query 154401 TCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCT- 154459 | ||| || |||| ||||||||||||||| | |||||| ||||| ||||||| ||| Sbjct 1781 CCCATGTGTATCCCGACCGCGACGCGCATGAGGAGGTGCTGGGGACGCTCGGCGA-TCTG 1723 Query 154460 ATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTC 154519 || ||||| | || || || |||||||| ||| | ||||| || | | | || Sbjct 1722 GCCGTGCATCTTGAGCAGGTAGGACTTCTCGAGGGTCTTGAAGCCGAAGTAGTCGAACTC 1663 Query 154520 AAAATCTAGCTCATGAGCGATGGCCGCATCGAG--CGTCGCGG 154560 || || | || || |||||| | ||||| |||||||| Sbjct 1662 GAAGTCGCGGTCGTGGAGGATGGCGCCGTCGAGGACGTCGCGG 1620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 || |||||||| || || ||||| |||| |||| | |||||| || ||||||| | Sbjct 2686 ATGGACGCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTGTACTCGACAATCTCGGTG 2627 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 ||||||||| ||| || || ||| | || ||||| || |||| ||||| | Sbjct 2626 CAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCCGTTGCAGTGG 2567 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT 153769 || ||| |||||||||| || |||||||||||| || | |||| ||| Sbjct 2566 TCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGACCTGGGAGTCGAGGAT 2517 >seq24354 Length=8886 Score = 147 bits (162), Expect = 2e-30 Identities = 332/490 (68%), Gaps = 13/490 (3%) Strand=Plus/Minus Query 153606 GCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGG 153665 || || || || |||||| ||| || ||| ||||||| | |||||| | ||| || Sbjct 7238 GCAAGGTTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGTGCATAGA 7179 Query 153666 TTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCT-TTTGCGATTGCACGCGTCTTT 153724 ||||||| | ||| ||| | |||||||||||||| || || | ||| ||||| || Sbjct 7178 TTGCTGCTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCA-GCGTCCTT 7120 Query 153725 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTC 153784 | || | |||||| ||| ||||| | ||||| |||| || | || | Sbjct 7119 ATAAAGGAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGAGTATGGCCGCCCAGAGCTG 7060 Query 153785 CTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTC 153844 | ||||||| | | | || | || ||||| ||| || |||||| || ||| Sbjct 7059 CCGCGCTCGTATCTGGCGCTTGTGCCGTCCCTCCGACTCATACTTCTCGTAGAGCTTCTC 7000 Query 153845 AAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA 153904 ||||| ||||||| ||| ||| ||||||| ||||||| || || |||||||| ||| Sbjct 6999 AAACTGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGGCACATCAGGCTCCA 6940 Query 153905 CATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964 | |||| | | ||||||| |||||| || || || ||||| | | |||| | || Sbjct 6939 AACTCCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAACCCGTAGAACAG 6880 Query 153965 GT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTAT 154020 | | |||| ||| |||||| ||||| | |||| || ||||||||| Sbjct 6879 ATTCCTTGCGCGCTGC--TCCTCC-TTTCCATGGT-TTTTTCGGAGGTTGAGCACGTCGA 6824 Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCG---C 154077 | |||||||||||||| || || | ||| | ||| | ||| || ||||| ||| | Sbjct 6823 AAATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTTCCCGCCAC 6764 Query 154078 CCTGATCGAC 154087 |||||||||| Sbjct 6763 CCTGATCGAC 6754 >seq45459 Length=4245 Score = 96.9 bits (106), Expect = 3e-15 Identities = 282/424 (67%), Gaps = 13/424 (3%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 || || || || ||||| |||||||||||||| |||||||| | ||||| | ||| Sbjct 3026 CTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAG 3085 Query 52365 TGGATCGAGA-GCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 ||| ||| |||||| ||| | | || ||||| | ||||||||| ||||| Sbjct 3086 TGGTGCGACTCGCGACAT-GCCTCTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGA 3144 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 |||| | || || ||| ||| ||||||||| | | || | | ||| | || Sbjct 3145 GGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCAT 3204 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || || ||| |||||| | || || |||||||||||||||||| ||||| Sbjct 3205 GCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGACTGCACTGCGACTT 3264 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA--CACGATCCT- 52600 ||| || ||| ||| || | |||| | || || || | || |||| | Sbjct 3265 TGCCTGTCTCCTTTACTCGAAACTGGTGA---ACAAGGTG--CCCGAAAGCAGGATCGTC 3319 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || | | | || || | ||||| ||||||||| | | ||| || || || Sbjct 3320 GAG-ATTGTAACCCACGCTGTCGAGATCGAGAAGGAGTTTGTCGTCGACGCACTTCCTGT 3378 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTT-TGTGGCGGATC 52719 || || | ||||||||| || ||||||| ||||||| ||||| ||| || || | Sbjct 3379 TGAACTTATCGGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCTGT-GCCGACC 3437 Query 52720 GTCT 52723 |||| Sbjct 3438 GTCT 3441 >seq4998 Length=959 Score = 96.9 bits (106), Expect = 3e-15 Identities = 282/424 (67%), Gaps = 13/424 (3%) Strand=Plus/Minus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 || || || || ||||| |||||||||||||| |||||||| | ||||| | ||| Sbjct 699 CTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAG 640 Query 52365 TGGATCGAGA-GCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 ||| ||| |||||| ||| | | || ||||| | ||||||||| ||||| Sbjct 639 TGGTGCGACTCGCGACAT-GCCTCTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGA 581 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 |||| | || || ||| ||| ||||||||| | | || | | ||| | || Sbjct 580 GGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCAT 521 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || || ||| |||||| | || || |||||||||||||||||| ||||| Sbjct 520 GCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGACTGCACTGCGACTT 461 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA--CACGATCCT- 52600 ||| || ||| ||| || | |||| | || || || | || |||| | Sbjct 460 TGCCTGTCTCCTTTACTCGAAACTGGTGA---ACAAGGTG--CCCGAAAGCAGGATCGTC 406 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || | | | || || | ||||| ||||||||| | | ||| || || || Sbjct 405 GAG-ATTGTAACCCACGCTGTCGAGATCGAGAAGGAGTTTGTCGTCGACGCACTTCCTGT 347 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTT-TGTGGCGGATC 52719 || || | ||||||||| || ||||||| ||||||| ||||| ||| || || | Sbjct 346 TGAACTTATCGGCATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCTGT-GCCGACC 288 Query 52720 GTCT 52723 |||| Sbjct 287 GTCT 284 >seq18597 Length=5183 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || ||||||||||| Sbjct 3078 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 3137 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| | || ||||||||||| || || || Sbjct 3138 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 3197 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || || || | ||| || | ||||| | || ||| | Sbjct 3198 ATACCCTCCTTGTC-CTGGATCTTCGTCTTGACGTTG-TCGATCGTGTCCGACGGCTCGA 3255 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 | || | || | ||| || || ||||| || || || |||||||||| Sbjct 3256 CGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495946702674240