Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18597 122 8e-23 seq48315 105 6e-18 seq18371 98.7 9e-16 seq10981 95.1 1e-14 seq20946 89.7 5e-13 seq9453 89.7 5e-13 >seq18597 Length=5183 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | || ||||| || || || ||||| || Sbjct 2849 TCCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 2908 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| || || ||| | |||| ||||| ||||| || || Sbjct 2909 GAGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGG 2968 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| ||| ||||| |||| |||| ||||||| ||| | Sbjct 2969 GATGCCCTCCTTGTCCTGGATCTTCGTCTTGACGTTG-TCGATCGTGTCCGACGGCTCAA 3027 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||| || |||||||| || || ||||| |||||||| Sbjct 3028 CGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 114 bits (126), Expect = 1e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || || || ||||| || Sbjct 3078 CCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 3137 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| | |||| ||||| ||||| || || Sbjct 3138 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGG 3197 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||||| |||| |||| ||||||| |||||| Sbjct 3198 ATACCCTCCTTGTCCTGGATCTTCGTCTTGACGTTG-TCGATCGTGTCCGACGGCTCGAC 3256 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || | ||| | ||| || |||||||| || || || |||||||||| Sbjct 3257 GTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq48315 Length=10477 Score = 105 bits (116), Expect = 6e-18 Identities = 143/196 (73%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 146618 TGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGC 146677 ||||| ||||| || || ||| || |||| ||| || ||||| ||||||| | || Sbjct 2706 TGACGAACTTGGAGAGGGAGATGGACGCCAGGTTGCAAACGGCGATCTCGTC---GGGGC 2650 Query 146678 AA---TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAttttttt 146734 | |||| |||||||||| |||||||||| ||||||||| |||| | || | | Sbjct 2649 ACGTGTACTCGACAATCTCGGTGCAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCT 2590 Query 146735 GGTT--ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGAC 146792 |||| ||| | ||||||| ||||||||||||||||||| || ||||| ||||| Sbjct 2589 GGTTCGACTTGCC--GTTGCAGTGGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGAC 2532 Query 146793 ATTGGTCTCGACGATG 146808 | || |||| |||| Sbjct 2531 CTGGGAGTCGAGGATG 2516 >seq18371 Length=23815 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||||| | ||| || || || ||||| |||||||| Sbjct 23803 TCCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGA 23744 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || |||||||| ||| |||||| || ||| ||||| || || Sbjct 23743 TAAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGG 23684 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || ||||| |||| || | ||||| | ||||| Sbjct 23683 GATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTG-TCAATTGTGTCGCTTGGCTCGA 23625 Query 127065 CTTCGA 127070 | |||| Sbjct 23624 CATCGA 23619 >seq10981 Length=11828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||||| | ||| || || || ||||| |||||||| Sbjct 2403 TCCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGA 2344 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || || ||||| ||| |||||| || ||| ||||| || || Sbjct 2343 TAAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGG 2284 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| || ||||| |||| || | ||||| | ||||| Sbjct 2283 GATCCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTG-TCAATTGTGTCGCTTGGCTCGA 2225 Query 127065 CTTCGA 127070 | |||| Sbjct 2224 CATCGA 2219 >seq20946 Length=4204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || | | | |||| ||||| ||||| ||||| |||||||||| | Sbjct 32 TCCTCGAGCTGCTTCCCGGTGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTCG 91 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| |||||| || || |||| ||||| || | ||| | Sbjct 92 TCCTGGATCTTCGCCTTGACGTTGTT-GATCGTTTCCGACGGGTCGACGTCAAGGGTGAT 150 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||||||||| || || || ||||||||||| Sbjct 151 GATCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 186 >seq9453 Length=4450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || | || || || || ||||| || || Sbjct 1093 CGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCGAGCTGCTTGCC 1034 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| ||||| ||||| || || ||||||||||||||| ||| || ||| Sbjct 1033 CGCGAAGATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTT 974 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 || |||| |||| ||||||| |||||| |||| ||| | |||||||| ||| Sbjct 973 GACGTTG-TCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTTTTGCCTGTC 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475198310166080