Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2764 141 1e-28 seq48315 134 2e-26 seq34148 105 8e-18 seq50892 98.7 1e-15 seq43102 98.7 1e-15 seq24680 87.8 2e-12 seq2068 86.0 8e-12 >seq2764 Length=7933 Score = 141 bits (156), Expect = 1e-28 Identities = 398/601 (66%), Gaps = 15/601 (2%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || |||| |||||| ||||| |||||||| || || |||||||| | ||||| Sbjct 3710 TATTCGCCCACCCTCTTCTCAAAGAAATTTGTCTTGCCTTCAAGGCTGATCATGTCCATC 3769 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAA-TCTGTTTGAGGAGAC 127349 |||| || || ||||| | ||| | | | ||||||| || || ||| | || Sbjct 3770 CAATCGAACGGATTCTTGCTTCTGTAAAGCGGCTCGTACCCCAAGTCGGT--GAGCATAC 3827 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| || |||| || || | ||| | || ||||| ||||| | | | Sbjct 3828 GATCCGCCACAAACTCGATATATTGGCCCATGAGGCCTGAATTCATCCCGATCAAGCTGA 3887 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 || ||||| || ||||||| | ||| || | || || ||||| | || ||| | Sbjct 3888 CGGGAAGCGCATCGCAGATGAAGCTCTTTTCGACATCTACTGCTTCTCTTATTATGCGAT 3947 Query 127470 GAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCC-ACA-GCAAACT 127526 ||| ||| | ||| | || | ||| | ||| | | ||| ||||| Sbjct 3948 TGATATGCTCCTGCGTCAGCTTGTTTTTG---AGTTTGGAATACAGCTGACACGCAAATG 4004 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 ||| | |||||||| || ||| || |||||||||||| || || ||||||| Sbjct 4005 AGCAGTGCAACCCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCATGA 4064 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 ||||||||||||||| |||||| || ||||| || || || |||||||| |||||||| | Sbjct 4065 GACCCCGCTTCTTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCTCAA 4124 Query 127647 CACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTC 127705 || ||||| || | ||| | |||||| |||| ||| || | | | ||||| Sbjct 4125 CAGTAGCGAAGGCGATTAGCCTCTCGGCGAAAGTCGCG----TTGCTCCCGATATACTTC 4180 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765 |||||| ||||| |||||| || ||| |||||| | ||| ||| || || Sbjct 4181 TGCGCCCATATCGCCTTCCTCTCGACACTTGGCACGGTCGAGTGCGCCGAAAACAGGACC 4240 Query 127766 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGG 127825 | | | || || || | ||||||| ||| || || |||||| || || |||| Sbjct 4241 TCCCTCTCCTTCGGGTCGTCGATGTACGAATCGATCAGAAGTGAATACGTCTCCTGGTGG 4300 Query 127826 A 127826 | Sbjct 4301 A 4301 >seq48315 Length=10477 Score = 134 bits (148), Expect = 2e-26 Identities = 366/550 (67%), Gaps = 19/550 (3%) Strand=Plus/Minus Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGA-GAG 116705 ||||| |||||||||| |||||| |||| ||||| | ||| |||| || ||| Sbjct 2372 CCCTCGGCCTCGTACTTCTCGTAGAGCGCCTTGAACTCGGCGCCC-CAGCACGTGTCGAG 2314 Query 116706 CCCTGGTGC-CTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 ||| ||| || | || || | ||| | ||| | || | || |||| || || Sbjct 2313 CCCCT-TGCACTCGTTCGGGCACATGAGCGTCCAGTCCCCGTTCGTCTGGACCCTCTCCA 2255 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC-- 116822 |||| ||||| |||||||||||||| |||| || |||| || | ||| |||| Sbjct 2254 TGAACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTC--GC---CCTCTCCATCTC 2200 Query 116823 ---CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 116879 ||| || || | | || | ||| | | ||| |||||||||||||| || | Sbjct 2199 GTTCCCGTGGTTCTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGCTCGAT 2140 Query 116880 GTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 |||| ||||||| || ||||| | | || |||||| || |||| |||||| Sbjct 2139 GTACGCCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTT 2080 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACG 116996 ||| || ||||| ||||| || | ||| || | || ||| || || ||||| || Sbjct 2079 GTTGAAGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGGATGTA 2020 Query 116997 AGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 117056 ||| | || | ||| | |||| || || || ||||| || |||| ||| Sbjct 2019 CGACGCGGACGCGCGGACGTTCGAGATGGACAGGCCGATCCCCCCCGCGTACTTGCTGAT 1960 Query 117057 TTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCA-CCCTTATTTGCGA 117115 ||||| | | |||| || |||| || || ||||| ||||| |||| | || Sbjct 1959 GACCGCGCAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTCCCTGACGCACG- 1901 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 | ||||||||||||||||| || || | || || || |||||||| || || || || | Sbjct 1900 TCAGGAAGCAGCTCGACATCTGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTGG 1841 Query 117176 CGTGGATGAA 117185 ||||| |||| Sbjct 1840 CGTGGGTGAA 1831 >seq34148 Length=11268 Score = 105 bits (116), Expect = 8e-18 Identities = 251/375 (67%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||||||| || || || || || ||||| || ||||| | ||| ||||| |||| | Sbjct 2068 ACGGTGATCTTGCGGTCGAATCGGCCGGGGCGTAGAAGGGCCTGGTCGAGGATGTCAACG 2127 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 ||||| || || |||||| | ||| || | | | ||||| || ||||||||| Sbjct 2128 CGGTTGGTAGCGGCGATGGTGATGATTCCGGGGTTGCCGTCGAAACCGTCCATCTCAACA 2187 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGC 12867 | || || || ||||| || ||||| || || || ||| ||| | || |||| | Sbjct 2188 AGGATCTGGTTAATGGTCTGCTCACGCTCGTCGTTACCGCCGGCGAA--TCCGGCACCAC 2245 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGG 12927 | || || || ||||| || || || ||||||| ||| || || || | || Sbjct 2246 GCTGGCGTCCTACAGCGTCGATCTCATCGATGAAAATGATGCAGGGGGCGTTCTTCTTGG 2305 Query 12928 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 | ||| || || || || | | || || ||||| || |||||||| || || | Sbjct 2306 CCTGGGAAAATATGTCACGGACACGGCTAGCTCCAACACCAACGAACATCTCGACGAACT 2365 Query 12988 TGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 13046 || | | | |||| ||||| ||||| | || || || | ||| ||||||| Sbjct 2366 CGGAACCAG-AGATTGAAATGAAAGGGACTCCTGCCTCGCCAGCAACGGCCTTGGCGAGG 2424 Query 13047 AGGGTCTTCCCCGTC 13061 |||||||| || ||| Sbjct 2425 AGGGTCTTACCTGTC 2439 >seq50892 Length=141790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| || || || |||||||| | ||||| ||||||||||| || | Sbjct 2131 AAACCATCCATTTCTGTTAATAGTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACCA 2072 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | |||| |||| |||| |||| ||||| |||||||| ||||| ||||| ||||| Sbjct 2071 CCAACACCAGCACCACGTTCTCTACCTACGGCATCAATTTCATCAATAAAAACAATACAA 2012 Query 12912 GGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 12971 || |||||| || || || | |||||| |||| ||||| | || | | Sbjct 2011 GGCGCATTTTCTGAAGCCTTTTGGAATAAATCTCGAACTCGGGCAGCACCAATCCCGATA 1952 Query 12972 AACATCTCCACAAA 12985 |||||||||||||| Sbjct 1951 AACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||| || || || |||||||| | ||||| ||||||||||| || | Sbjct 8878 AAACCATCCATTTCTGTTAATAGTTGATTTAGTGTTTGCTCACGTTCATCGTTTCCACCA 8937 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | |||| |||| |||| |||| ||||| |||||||| ||||| ||||| ||||| Sbjct 8938 CCAACACCAGCACCACGTTCTCTACCTACGGCATCAATTTCATCAATAAAAACAATACAA 8997 Query 12912 GGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 12971 || |||||| || || || | |||||| |||| ||||| | || | | Sbjct 8998 GGCGCATTTTCTGAAGCCTTTTGGAATAAATCTCGAACTCGGGCAGCACCAATCCCGATA 9057 Query 12972 AACATCTCCACAAA 12985 |||||||||||||| Sbjct 9058 AACATCTCCACAAA 9071 >seq24680 Length=7660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 208/306 (68%), Gaps = 9/306 (3%) Strand=Plus/Minus Query 12680 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAG 12739 ||| ||| ||||||||||| || || || ||||| || | ||||| | ||| || Sbjct 1076 GGGCAGGTCCACGGTGATCTGCCGGTCGAACCGACCCGGCCTCGTCAGGGCCTTGTCGAG 1017 Query 12740 GATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC-TCGTTATCGAAGCCAT 12798 ||| || | |||||| ||| |||| | ||| || | ||||||| || | |||||| | Sbjct 1016 GATGTCGACGCGGTTGGTCCCCGCCAGGACGACCACGCCCGTCGACGACGT-GAAGCCGT 958 Query 12799 CCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGG--GCAT 12853 ||||||| | | || | || || | || | || || || || || ||| | | || Sbjct 957 CCATCTC-GACGAGCATCTGGTTCAGCGTGTTCTCCCGCTCGTCGTTGCCGCCGCCGAAT 899 Query 12854 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG 12913 || |||| | ||| ||| | ||||||||||| || ||||| ||||| || || || || Sbjct 898 CCCCCCCG-TCCGCGCTGCCTCCCGACGGCGTCGATCTCGTCGATGAAGACTATGCAGGG 840 Query 12914 TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 12973 || | ||||| | | |||| || ||||||| | | ||||| || || || Sbjct 839 GGCGTTGGCGCGGGCCTCCTTGAAGAGGTCGCGCACTCGCGACGGTCCGACGCCGACGAA 780 Query 12974 CATCTC 12979 ||| || Sbjct 779 CATTTC 774 >seq2068 Length=11277 Score = 86.0 bits (94), Expect = 8e-12 Identities = 280/427 (66%), Gaps = 15/427 (4%) Strand=Plus/Plus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAA-GCGTTGGCATATAGAA 175806 || ||||| ||||| | | || ||||| |||| | ||||| | |||| | |||| Sbjct 4665 CCCGTGCCGATACCCTGCGCTCCATTCACAAGAAGAAGTGGAATGACAGGGCAAA-AGAA 4723 Query 175807 GTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATC--CCTC 175864 || |||||||||| | || ||||| ||| |||| ||||| | ||| || | || Sbjct 4724 TTCGGGTTCAATCGATAGGCCGTCATCTTCCCTGTAGTCGAGCAACGCGTCGTCAACTTC 4783 Query 175865 GGATCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 || ||| | | ||| | || | | ||||||||||| || | | Sbjct 4784 GGGG-AAACAGAAGCCTAGCTACTGGGGACAAATGAGTGAAGATGTATCTGGGGGATGCG 4842 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || || | || |||||||| || || ||||| || ||| ||| || || |||||| Sbjct 4843 GCGTCATCCCCGCCCATGAGGCGAGTTCCAAACTGGCCAATAGGCAGTAGCAGGTTGATA 4902 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCA-ACTTGACAATCGTATCCGCGAGGGAGACT-- 176041 |||||||| |||| ||| | ||||| ||||| || || | | | ||||| Sbjct 4903 TTGTTTGATCCCACGAAGTTCTGCGCCATACTTG-TGATTGTTGC----ATGAAGACTGG 4957 Query 176042 --TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCA 176099 || ||||| || ||||| | | ||||| || | || || ||||| ||||| | Sbjct 4958 CCTCTCCGTGGTGATAGGCAGTGTGCTCCGCGCAGTAGCCAGCTAATTGCGCAACCTTGA 5017 Query 176100 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 176159 |||| ||||| || || | |||||| |||| || | |||||| || || ||||| | Sbjct 5018 TCTCGTCCTTCAGATTGCGCTTGAAGCAGGCATGCAAAATCTTTCTTTGCGATGGCTTTA 5077 Query 176160 GGCCGTC 176166 | ||||| Sbjct 5078 GTCCGTC 5084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613116917394720