Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq48315 132 8e-26 seq45459 123 4e-23 seq4998 123 4e-23 >seq48315 Length=10477 Score = 132 bits (146), Expect = 8e-26 Identities = 389/587 (66%), Gaps = 18/587 (3%) Strand=Plus/Minus Query 205160 ACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATT 205219 ||||||||||| |||||||| |||||| || |||| ||||| || | ||||| | Sbjct 2264 ACCCTCTCCATGAACAGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTCGCCCTC--T 2207 Query 205220 CCGTC--GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCAC 205276 || || || || ||||||| | | ||| || ||| || | ||||| ||||||||| Sbjct 2206 CCATCTCGTTCCCGTGGTTCTTCCTAAGGTCGAGG-AAGGCGAAGATGTCCGCGTGCCAC 2148 Query 205277 GGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGA 205336 ||||| | || | || || | || |||||| || |||||||| || || Sbjct 2147 GGCTCGATGTACGCCGCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGC 2088 Query 205337 GTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTG 205396 | | | |||||| || || ||||| ||||| | ||||||| || |||||||||| Sbjct 2087 GCCGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCC 2028 Query 205397 TTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACAC 205456 |||| ||| | || | ||||| ||||||| | ||| ||||| || | || Sbjct 2027 CGGATGTACGACGCGGACGCGCGGACGTTCGAGATGGACAGGCCGATCCCCCCCGCGTAC 1968 Query 205457 TTGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGC 205515 ||| ||| ||||| ||||| || ||| ||| ||||| ||||||| || || | Sbjct 1967 TTGCTGATGACCGCGCAGTTCTTG-AGCGTGTCGTATATGCCGTCGATGGAGTCCTC--C 1911 Query 205516 CAGTGTCAC--CAGATAGCACGAAGCCAGCTTGGCAAAGTTG---GTGCCCGCGTGGAAG 205570 | | ||| ||| |||| | || || || |||| || || |||| ||| Sbjct 1910 CTGACGCACGTCAGGAAGCAGCTCGACATCT--GC-GGGTTGGGCGTCCCGGCGTTGAAC 1854 Query 205571 AGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACG 205630 |||||||| |||||||| ||||| | || ||| | |||| ||||| || || Sbjct 1853 AGCGTGGGCGTGGCGTGGGTGAAGAACCGCTGGCTGAGGAGGTTGTACGTCTCGAGGACC 1794 Query 205631 CTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTC 205690 ||||| | ||| ||| || || | |||| | ||||| |||||| || || | | Sbjct 1793 CTCTCGATGTCGCCCATGTGTATCCCGACCGCGACGCGCATGAGGAGGTGCTGGGGACGC 1734 Query 205691 TCCATCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 || | | ||| || ||||||||| |||| |||| ||||| Sbjct 1733 TCGGCGATCTGGCCGTGCATCTTGAGCAGGTAGGACTTCTCGAGGGT 1687 Score = 125 bits (138), Expect = 1e-23 Identities = 171/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGC---AGGCCTGCTTCTCAGATAGTACAT 203895 || || |||||||||||| ||||||| |||| ||||| | || || |||||||| Sbjct 3806 CTGGTTCACCGTGAACTGGATGGCGT---CGGCCTTGGGCCTCGTCCTGAGGTAGTACAT 3750 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || || |||| |||| |||| | ||||||| | ||| |||||| ||| Sbjct 3749 CCCCGTCTTGAGCCCTTTCTTCCACGCGTAGAAGTGCATGCTCGTCAGCTTGCTCGTGTT 3690 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || ||| | ||||| | ||||| |||||| ||| ||| |||||||| || || | Sbjct 3689 CGGCTCGCCGATGTGCACGTTCATGCTCTGGCTCTGGCAAATG-AAGGCGCCTCGGTCGG 3631 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069 ||||||| | || |||| ||| | |||||||| ||||||||| | | ||| Sbjct 3630 CGGCCATGTCGAGGATGGCGCGCTGGGGGATCTCCCAAACCGTCTTGTAGATGTC 3576 >seq45459 Length=4245 Score = 123 bits (136), Expect = 4e-23 Identities = 249/360 (69%), Gaps = 21/360 (6%) Strand=Plus/Minus Query 159811 AACGGGGAGCGCTTCCGAC-AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 ||| || || || || ||| | |||||||||||| |||||||| || | ||| ||||||| Sbjct 3379 AACAGGAAGTGCGTC-GACGACAAACTCCTTCTCGATCTCGACAGCGTGGGTTACAATCT 3321 Query 159870 G--CGAGACA-CGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACG 159926 ||| | | |||| | || || ||| | || | ||||| || | Sbjct 3320 CGACGATCCTGCTTTCGGGCACCTTGTTCACCAGTTTCGAGT------AAAGGAGACAGG 3267 Query 159927 CAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCG 159986 ||||||||||||||||||| ||||| || || || | |||||| || | ||| || | Sbjct 3266 CAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACCAG 3207 Query 159987 GCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATC 160045 |||||| ||| ||| |||||||| || |||| |||| ||| | ||||| || || || Sbjct 3206 GCATGAGCCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCGCTGAAGAAAATG 3148 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC 160105 ||||| ||||| || || || | | || ||| | |||||||| |||| | ||| Sbjct 3147 CCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGC----ATGTCGCGAGTC 3092 Query 160106 -CACCTTTT---GGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 |||| || |||||| | ||||| || | |||||||| | ||||| |||||| Sbjct 3091 GCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTT 3032 >seq4998 Length=959 Score = 123 bits (136), Expect = 4e-23 Identities = 249/360 (69%), Gaps = 21/360 (6%) Strand=Plus/Plus Query 159811 AACGGGGAGCGCTTCCGAC-AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 ||| || || || || ||| | |||||||||||| |||||||| || | ||| ||||||| Sbjct 346 AACAGGAAGTGCGTC-GACGACAAACTCCTTCTCGATCTCGACAGCGTGGGTTACAATCT 404 Query 159870 G--CGAGACA-CGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACG 159926 ||| | | |||| | || || ||| | || | ||||| || | Sbjct 405 CGACGATCCTGCTTTCGGGCACCTTGTTCACCAGTTTCGAGT------AAAGGAGACAGG 458 Query 159927 CAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCG 159986 ||||||||||||||||||| ||||| || || || | |||||| || | ||| || | Sbjct 459 CAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACCAG 518 Query 159987 GCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATC 160045 |||||| ||| ||| |||||||| || |||| |||| ||| | ||||| || || || Sbjct 519 GCATGAGCCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCGCTGAAGAAAATG 577 Query 160046 CCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC 160105 ||||| ||||| || || || | | || ||| | |||||||| |||| | ||| Sbjct 578 CCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGC----ATGTCGCGAGTC 633 Query 160106 -CACCTTTT---GGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 |||| || |||||| | ||||| || | |||||||| | ||||| |||||| Sbjct 634 GCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTT 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794649362019520