Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18597 134 2e-26 seq9453 114 1e-20 seq20946 89.7 6e-13 seq13375 89.7 6e-13 seq3706 89.7 6e-13 seq46929 82.4 9e-11 >seq18597 Length=5183 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 2885 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAA 2944 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| || || | || | || |||||||||| ||||||| |||||| ||| Sbjct 2945 AATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTGA-CGT 3003 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | ||||| || || || ||||| || |||| Sbjct 3004 TGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTAA 3063 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 3064 CAAAGATCTGCAT 3076 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| ||||||||||| |||||||| Sbjct 3113 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 3172 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| || || | || | | |||||||||| ||||||| |||||| ||| Sbjct 3173 AATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTTCGTCTTGA-CGT 3231 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | ||||| || || || ||||| || || | Sbjct 3232 TGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGA 3291 Query 46581 CAAAGATTTGCA 46592 | || || |||| Sbjct 3292 CGAAAATCTGCA 3303 >seq9453 Length=4450 Score = 114 bits (126), Expect = 1e-20 Identities = 129/170 (76%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| |||||||||||||| ||||| Sbjct 1087 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAA 1028 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||| || || | || | || |||||||||| |||||| |||||| ||| Sbjct 1027 GATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGT 969 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570 | | | |||||| | || ||||| | |||||||||||||| ||| Sbjct 968 TGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTTTTGCCTGTC 919 >seq20946 Length=4204 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 |||| |||||||| | || ||||| |||| ||||||||||| |||| ||| |||| Sbjct 2 TGGACGTTGTAGTCCAAAAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGTGAAAATCAGA 61 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCAC 46527 ||||| || || | || | || ||||| |||| ||||||| ||||| ||| | | Sbjct 62 CGCTGTTGATCAGGAGGGATGCCCTCCTCGTCCTGGATCTTCGCCTTGA-CGTTGTTGAT 120 Query 46528 CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 ||| || || || || || | |||||| | ||||| ||||| || || || || || Sbjct 121 CGTTTCCGACGGGTCGACGTCAAGGGTGATGATCTTGCCGGTCAGGGTCTTGACGAAAAT 180 Query 46588 TTGCAT 46593 ||||| Sbjct 181 CTGCAT 186 >seq13375 Length=5022 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| || ||||| || | ||||| |||||||||||||| || || |||| ||||| Sbjct 4385 AGATGAAAAGTACTTTCGTGCTGGATGTTGTAGTCGGATAGCGTCCGGCCGTCTTCGAGG 4326 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || ||||||||| | ||||| ||||| ||||||| Sbjct 4325 TGTTTGCCGGCGTAGATCAATCGCTGTTGGTCGG 4292 >seq3706 Length=3511 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/205 (70%), Gaps = 14/205 (7%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC---GAGCTGCTTGCCGGC 46458 |||||| ||||| |||||||| || || ||||| ||| |||| ||||| ||| ||| | Sbjct 3091 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGTCGCCGTCCTCGAGCTACTTCCCGCC 3150 Query 46459 GAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCT---------CCTTGTCCATGATCTT 46509 || |||| ||||| || || | || | || | |||||||| |||||| Sbjct 3151 AAAAATCAGACGCTGTTGATCAGGGGGGATGCCCCATGTGCCCCCCTTGTCCTGGATCTT 3210 Query 46510 CTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCG 46568 |||||| ||| | || ||| || || || || || | ||||| || || || | Sbjct 3211 AGTCTTGA-CGTTGTCAATCGTATCCGACGGCTCGACGTCGAGGGTGATCGTCTTCCCGG 3269 Query 46569 TCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||||||| ||||| Sbjct 3270 TCAGGGTTTTAACAAAGATCTGCAT 3294 >seq46929 Length=1090 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||| || ||||| || | ||||| |||||||||||||| | || | Sbjct 382 ACGCAGGACCAAATGTAAAGTACTTTCGTGCTGGATGTTGTAGTCGGATAGCGCACGGCC 323 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 || ||||| || ||||| |||||||||| || |||| ||||| ||| || |||| Sbjct 322 ATCTTCGAGTTGTTTGCCAGCGAATATCAGCCGTTGCTCGTCGGTGGGCTTGCCCTCC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564878823591840