Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq45459 172 5e-38 seq4998 134 1e-26 seq18597 131 2e-25 seq9453 125 7e-24 seq3706 82.4 8e-11 >seq45459 Length=4245 Score = 172 bits (190), Expect = 5e-38 Identities = 365/545 (67%), Gaps = 0/545 (0%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||||| |||| || ||||| | |||||| || ||||| |||| | Sbjct 3270 CAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGA 3211 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||| || || || |||||||| || |||||| ||| || ||||| Sbjct 3210 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAA 3151 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || | ||||| |||| | ||| | | | || Sbjct 3150 ATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAGTCG 3091 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||| || ||||| | ||||||| | |||||||||| || ||||||||||| Sbjct 3090 CACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTG 3031 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 | | | | || || || | | ||| |||||||| || |||||| | Sbjct 3030 AGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGTC 2971 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||| | ||| || | ||| |||||||| ||||| || |||| |||||| | Sbjct 2970 TCACTGTGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGGCGGAT 2911 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || || ||||| | | || || |||||||| || ||||| || ||| Sbjct 2910 TGAACCTCGGTGGCGAAGTTCCCACATAGGTTCTCGTTGACTATACCGTCAGACGCAGCG 2851 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCG 133374 || ||||| || | ||| || ||||| | ||||||| |||||| |||||||| Sbjct 2850 AAGAAGGCGAGGATGTGGGAGACAAAATGCCTTTCGTTGTTCGTCAAGCCGTCCCAGTCC 2791 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 ||||| || ||| || | ||||||| | ||||| || || ||||| || || ||| Sbjct 2790 TTTAAGTCCTCGGCCAGATCAATCTCCTCGGCCGTCCAGAATGATGCCTCTGCCTTCTTG 2731 Query 133435 TACAT 133439 ||||| Sbjct 2730 TACAT 2726 >seq4998 Length=959 Score = 134 bits (148), Expect = 1e-26 Identities = 317/479 (66%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || ||||||||||| |||| || ||||| | |||||| || ||||| |||| | Sbjct 455 CAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGA 514 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||| || || || |||||||| || |||||| ||| || ||||| Sbjct 515 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAA 574 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || | ||||| |||| | ||| | | | || Sbjct 575 ATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAGTCG 634 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||| || ||||| | ||||||| | |||||||||| || ||||||||||| Sbjct 635 CACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTTG 694 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 | | | | || || || | | ||| |||||||| || |||||| | Sbjct 695 AGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGTC 754 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||| | ||| || | ||| |||||||| ||||| || |||| |||||| | Sbjct 755 TCACTGTGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGGCGGAT 814 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || || ||||| | | || || |||||||| || ||||| || ||| Sbjct 815 TGAACCTCGGTGGCGAAGTTCCCACATAGGTTCTCGTTGACTATACCGTCAGACGCAGCG 874 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC 133373 || ||||| || | ||| || || || | ||||||| |||||| |||||||| Sbjct 875 AAGAAGGCGAGGATGTGGGAGACAAAGTGCCTTTCGTTGTTCGTCAAGCCGTCCCAGTC 933 >seq18597 Length=5183 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || ||||| || || || || || || || |||||| | ||||||||| | | | Sbjct 3303 TGCAGATTTTCGTCAAGACCCTGACCGGGAAGACGATCACCCTTGACGTCGAGCCGTCGG 3244 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| || | | | | |||| || |||| ||||| ||||| || ||| | || ||| Sbjct 3243 ACA-CGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGTATCCCCCCTGATCAA 3185 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || |||| ||||||||| ||||||||| Sbjct 3184 CAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAAC 3125 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || || |||||||| ||| Sbjct 3124 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGT 3089 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || || |||||| | ||||| ||| | | Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | |||| || |||| ||||| ||||| || ||| | || || Sbjct 3016 GACA-CGATCGACAACGTCAAGACGAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 2958 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| ||| || || ||||| || || | ||||||||| |||||||| Sbjct 2957 ACAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 2898 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || |||||||| ||| Sbjct 2897 CATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGT 2861 >seq9453 Length=4450 Score = 125 bits (138), Expect = 7e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||||||||||||| |||| |||||| || | |||| || | | | | |||| Sbjct 920 ACAGGCAAAACCATCACCCTCGATGTCGAGCCCTCGGACA-CGATCGACAACGTCAAGAC 978 Query 38328 AAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||| | || |||||||| || || | ||||||||| Sbjct 979 CAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTGATCTTCGCGGGCAA 1038 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| || |||||| |||||||||||||| ||||| ||||||| || Sbjct 1039 GCAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATCCAGAAGGAGTCGACGCTCCA 1098 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 | || || || | | |||||| || Sbjct 1099 CCTCGTCCTCCGGCTCCGCGGCGGCGGC 1126 >seq3706 Length=3511 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/225 (69%), Gaps = 16/225 (7%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || || || || |||||| ||||||||||| | | Sbjct 3294 ATGCAGATCTTTGTTAAAACCCTGACCGGGAAGACGATCACCCTCGACGTCGAGCCGTCG 3235 Query 38304 GACA-GCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAA---------AGAGGGAATTC 38352 || | | || |||| | |||| || |||| ||||| | ||| || | Sbjct 3234 GATACGATTGACAACG--TCAAGACTAAGATCCAGGACAAGGGGGGCACATGGGGCATCC 3177 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCT---GGACGACGAGCGCACCC 38409 || | || |||||||| || |||| | || || |||| ||||| ||| ||||||| Sbjct 3176 CCCCTGATCAACAGCGTCTGATTTTTGGCGGGAAGTAGCTCGAGGACGGCGACCGCACCC 3117 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGC 38454 | |||||||||||||| ||||| ||| || || ||||||| Sbjct 3116 TTTCGGACTACAACATCCAGAAGGAGTTGACCCTCCACTTGGTGC 3072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499854615073280