Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq50892 163 1e-34 seq43102 163 1e-34 >seq50892 Length=141790 Score = 163 bits (180), Expect = 1e-34 Identities = 218/303 (72%), Gaps = 9/303 (3%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||| | |||||||||||||| || || ||||| ||||| | ||||| || ||||| Sbjct 101617 GTGACTAAAGCAGTAATTACTGTACCAGCATATTTTAATGACTCTCAACGTCAGGCAACA 101558 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| | ||||||||| | | ||||| ||||||||||||||||| |||||| Sbjct 101557 GTTGATGCAGGTAAAATTGCTGGTATTGAAGTTCTACGAATTATTAATGAACCAACAGCA 101498 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||| | |||| ||||| ||| | |||||||| || | | | |||||||| Sbjct 101497 GCTTCATTAGCTTATGGGTTAG-------ATAAGAAACAAAATGAGACA--ATTTTAGTT 101447 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||||| ||||| || || |||| ||| || | | | | ||||| ||||| Sbjct 101446 TTTGATTTAGGTGGTGGGACATTTGATGTTTCAGTTTTAGAAGTAGGTGATGGTATATTT 101387 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 || ||| |||| ||| ||||| |||| || ||||| ||| ||||||| ||| | Sbjct 101386 GAGGTATTATCAACAGCTGGCGATACAAATCTGGGTGGTGACGATTTTGATAAAGCATTA 101327 Query 451613 GTG 451615 ||| Sbjct 101326 GTG 101324 >seq43102 Length=56976 Score = 163 bits (180), Expect = 1e-34 Identities = 218/303 (72%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||| | |||||||||||||| || || ||||| ||||| | ||||| || ||||| Sbjct 51184 GTGACTAAAGCAGTAATTACTGTACCAGCATATTTTAATGACTCTCAACGTCAGGCAACA 51243 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| | ||||||||| | | ||||| ||||||||||||||||| |||||| Sbjct 51244 GTTGATGCAGGTAAAATTGCTGGTATTGAAGTTCTACGAATTATTAATGAACCAACAGCA 51303 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||| | |||| ||||| ||| | |||||||| || | | | |||||||| Sbjct 51304 GCTTCATTAGCTTATGGGTTAG-------ATAAGAAACAAAATGAGACA--ATTTTAGTT 51354 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||||| ||||| || || |||| ||| || | | | | ||||| ||||| Sbjct 51355 TTTGATTTAGGTGGTGGGACATTTGATGTTTCAGTTTTAGAAGTAGGTGATGGTATATTT 51414 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 || ||| |||| ||| ||||| |||| || ||||| ||| ||||||| ||| | Sbjct 51415 GAGGTATTATCAACAGCTGGCGATACAAATCTGGGTGGTGACGATTTTGATAAAGCATTA 51474 Query 451613 GTG 451615 ||| Sbjct 51475 GTG 51477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974430125408336