Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq50892 208 6e-48 seq43102 208 6e-48 >seq50892 Length=141790 Score = 208 bits (230), Expect = 6e-48 Identities = 363/526 (69%), Gaps = 19/526 (4%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||||||| || | ||||| ||| | ||||||||| ||||||||||| || Sbjct 100572 GCAGTCACTGATAGTAAACCATCAACATTAATATCAAATGTCACTTCAATTTGTGGACGA 100631 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||| | |||| || || ||||| || ||||| |||| ||| | ||||| | || Sbjct 100632 CCTTTTGGAGCTTCAGGAATTCCTTCTAATTTAAAATTTCCTAGACTCTTATTTCCACTA 100691 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 | || || ||| || | || | || || ||| ||||| ||||||| Sbjct 100692 ACAATTTCTCTTTCTCCTTGTAATACATGAATTTCAACGTTTGTTTGGTTATCTGCTGCG 100751 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 |||| ||||| | ||||||||| |||||||||||| |||| | |||||| || ||| Sbjct 100752 GTTGAAAATAATTCTGATTTTTTAACAGGAATTGTTGTATTTCGAGCAATAAGTTTTGTC 100811 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 |||||||||||| ||||||| | |||||| || | ||||| ||||| | || | |||| Sbjct 100812 ATAATACCACCTACTGTTTCGACACCAAGTGATAATGGAGTAACATCTAATAATAAAATA 100871 Query 517559 T-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | | ||| ||| ||| | | |||| | ||||||||||| |||||| Sbjct 100872 TCTGTGA-------------TTTCACCTGCTAAAATACCGGCTTGAATAGCTGCACCAAT 100918 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 517677 ||| ||| ||||||| ||||| || | || |||| ||||||| ||| | ||| | |||| Sbjct 100919 TGCGACAACTTCATCTGGATTTACTGATTTATTTGGTTTTTTTCCAGTTAAAGA--TTGA 100976 Query 517678 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 | || | | | || || |||||||||| ||| || || ||||| || | ||||| | Sbjct 100977 ACTAATTCTTGTATAGCT--GGAATACGAGTTGAACCACCTACTAAAACGACTTCATTAA 101034 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| ||| | ||||| ||| |||| |||||||||| || Sbjct 101035 TTCCAGATTGATCTAATTTTGCATCTTTTAAAGCTTTTTCAACCGG 101080 Score = 140 bits (154), Expect = 2e-27 Identities = 242/349 (69%), Gaps = 6/349 (2%) Strand=Plus/Plus Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 ||||||||| | |||| |||| ||||||||||| ||| || | |||||| Sbjct 101280 AAATCTGTTCCTTCTTTTGTCTTAAAATCTTCAACTAGCCAGCGCACTAATGCTTTATCA 101339 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 ||||| ||||| |||| || |||| || | || | | ||| | || | ||||| Sbjct 101340 AAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCATCA 101399 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 | | |||| | |||||| || |||||||| | |||||||| | | ||| Sbjct 101400 CCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTA--AAATTG 101457 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 | || || ||| || ||||| | ||||| || || | ||| || |||||||||||| Sbjct 101458 -TCTCATT---TTGTTTCTTATCTAACCCATAAGCTAATGAAGCTGCTGTTGGTTCATTA 101513 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 ||||||| | ||| | || |||||||||| | |||||||| || || || | ||| Sbjct 101514 ATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTGTTGCCTGACGTTGA 101573 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTT 518318 || || ||||||||||| || |||||||| || || | ||| || |||| Sbjct 101574 GAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTAGTCACATCTT 101622 Score = 122 bits (134), Expect = 7e-22 Identities = 206/293 (70%), Gaps = 19/293 (6%) Strand=Plus/Plus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 |||||||| || || |||| || ||||| ||| || || |||| ||||| ||| Sbjct 101337 TCAAAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCA 101396 Query 322145 TTTGAGATA-TTCATTAAC-GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTA 322202 | | || ||| ||| |||||||| || |||||| | ||||| ||| |||| | | Sbjct 101397 TC--ACCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTAAAA 101454 Query 322203 CGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTG 322262 || | | | ||| ||| || || |||| || || || | | |||| Sbjct 101455 --TTGTCTC-ATTTTGTTTCTT--AT----------CTAACCCATAAGCTAATGAAGCTG 101499 Query 322263 CAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAG 322322 | |||||||||||||| ||| ||||| || | ||| ||||||||| | | ||||| | Sbjct 101500 CTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTG 101559 Query 322323 TTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTA 322375 |||| || | || | ||||||||||||||||||||||||||| ||||||||| Sbjct 101560 TTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTA 101612 >seq43102 Length=56976 Score = 208 bits (230), Expect = 6e-48 Identities = 363/526 (69%), Gaps = 19/526 (4%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||||||| || | ||||| ||| | ||||||||| ||||||||||| || Sbjct 52229 GCAGTCACTGATAGTAAACCATCAACATTAATATCAAATGTCACTTCAATTTGTGGACGA 52170 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||| | |||| || || ||||| || ||||| |||| ||| | ||||| | || Sbjct 52169 CCTTTTGGAGCTTCAGGAATTCCTTCTAATTTAAAATTTCCTAGACTCTTATTTCCACTA 52110 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 | || || ||| || | || | || || ||| ||||| ||||||| Sbjct 52109 ACAATTTCTCTTTCTCCTTGTAATACATGAATTTCAACGTTTGTTTGGTTATCTGCTGCG 52050 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 |||| ||||| | ||||||||| |||||||||||| |||| | |||||| || ||| Sbjct 52049 GTTGAAAATAATTCTGATTTTTTAACAGGAATTGTTGTATTTCGAGCAATAAGTTTTGTC 51990 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 |||||||||||| ||||||| | |||||| || | ||||| ||||| | || | |||| Sbjct 51989 ATAATACCACCTACTGTTTCGACACCAAGTGATAATGGAGTAACATCTAATAATAAAATA 51930 Query 517559 T-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | | ||| ||| ||| | | |||| | ||||||||||| |||||| Sbjct 51929 TCTGTGA-------------TTTCACCTGCTAAAATACCGGCTTGAATAGCTGCACCAAT 51883 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 517677 ||| ||| ||||||| ||||| || | || |||| ||||||| ||| | ||| | |||| Sbjct 51882 TGCGACAACTTCATCTGGATTTACTGATTTATTTGGTTTTTTTCCAGTTAAAGA--TTGA 51825 Query 517678 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 | || | | | || || |||||||||| ||| || || ||||| || | ||||| | Sbjct 51824 ACTAATTCTTGTATAGCT--GGAATACGAGTTGAACCACCTACTAAAACGACTTCATTAA 51767 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| ||| | ||||| ||| |||| |||||||||| || Sbjct 51766 TTCCAGATTGATCTAATTTTGCATCTTTTAAAGCTTTTTCAACCGG 51721 Score = 140 bits (154), Expect = 2e-27 Identities = 242/349 (69%), Gaps = 6/349 (2%) Strand=Plus/Minus Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 ||||||||| | |||| |||| ||||||||||| ||| || | |||||| Sbjct 51521 AAATCTGTTCCTTCTTTTGTCTTAAAATCTTCAACTAGCCAGCGCACTAATGCTTTATCA 51462 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 ||||| ||||| |||| || |||| || | || | | ||| | || | ||||| Sbjct 51461 AAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCATCA 51402 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 | | |||| | |||||| || |||||||| | |||||||| | | ||| Sbjct 51401 CCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTA--AAATTG 51344 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 | || || ||| || ||||| | ||||| || || | ||| || |||||||||||| Sbjct 51343 -TCTCATT---TTGTTTCTTATCTAACCCATAAGCTAATGAAGCTGCTGTTGGTTCATTA 51288 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 ||||||| | ||| | || |||||||||| | |||||||| || || || | ||| Sbjct 51287 ATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTGTTGCCTGACGTTGA 51228 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTT 518318 || || ||||||||||| || |||||||| || || | ||| || |||| Sbjct 51227 GAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTAGTCACATCTT 51179 Score = 122 bits (134), Expect = 7e-22 Identities = 206/293 (70%), Gaps = 19/293 (6%) Strand=Plus/Minus Query 322085 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCTAATGTTCTAAATACTCCA 322144 |||||||| || || |||| || ||||| ||| || || |||| ||||| ||| Sbjct 51464 TCAAAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCA 51405 Query 322145 TTTGAGATA-TTCATTAAC-GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTA 322202 | | || ||| ||| |||||||| || |||||| | ||||| ||| |||| | | Sbjct 51404 TC--ACCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTAAAA 51347 Query 322203 CGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTG 322262 || | | | ||| ||| || || |||| || || || | | |||| Sbjct 51346 --TTGTCTC-ATTTTGTTTCTT--AT----------CTAACCCATAAGCTAATGAAGCTG 51302 Query 322263 CAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAG 322322 | |||||||||||||| ||| ||||| || | ||| ||||||||| | | ||||| | Sbjct 51301 CTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTG 51242 Query 322323 TTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTA 322375 |||| || | || | ||||||||||||||||||||||||||| ||||||||| Sbjct 51241 TTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTA 51189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778296971321752