Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq45459 156 5e-33 seq4998 156 5e-33 seq2764 120 4e-22 seq40427 96.9 4e-15 seq14466 96.9 4e-15 seq50892 95.1 2e-14 seq43102 95.1 2e-14 seq2068 95.1 2e-14 seq24354 93.3 5e-14 seq2697 82.4 9e-11 >seq45459 Length=4245 Score = 156 bits (172), Expect = 5e-33 Identities = 299/436 (69%), Gaps = 6/436 (1%) Strand=Plus/Plus Query 101899 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 101958 ||||||| || ||||| |||| ||| || || || || ||||| | | |||| Sbjct 2835 ACATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAACT 2894 Query 101959 TTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAA--TGTCATAA 102016 | || ||||| |||||| | || || || | |||||| | | |||| || | | Sbjct 2895 TCGCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCCGT-- 2952 Query 102017 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 102076 ||||| | || | ||||| || || || |||| || |||||||| || Sbjct 2953 TGAAAACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAGGC 3012 Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 || |||| ||| ||| | | |||||| | || || || || |||| || || ||| | Sbjct 3013 CGACAAGATGCACCTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAA 3072 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTT-GCTGAGCGACTCTTCGCAT 102195 |||||| | ||||||| || | | | | |||| || ||||| | |||| | Sbjct 3073 TTGGGCCCTTAAGTGGTGCGACTCGC-GACATGCCTCTTTCGCGGAGCGGTGCATCGCCT 3131 Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255 | || || ||||| || |||||| || ||||||||||| || | |||||||||| Sbjct 3132 TCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTCAAGA 3191 Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 102315 ||||||| |||||||| |||||||| ||||| ||||||||||| || || ||||| |||| Sbjct 3192 AGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGAC 3251 Query 102316 TCCACCAAGAGTTTGC 102331 | ||| || ||||| Sbjct 3252 TGCACTGCGACTTTGC 3267 >seq4998 Length=959 Score = 156 bits (172), Expect = 5e-33 Identities = 299/436 (69%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 101899 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 101958 ||||||| || ||||| |||| ||| || || || || ||||| | | |||| Sbjct 890 ACATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAACT 831 Query 101959 TTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAA--TGTCATAA 102016 | || ||||| |||||| | || || || | |||||| | | |||| || | | Sbjct 830 TCGCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCCGT-- 773 Query 102017 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 102076 ||||| | || | ||||| || || || |||| || |||||||| || Sbjct 772 TGAAAACATTCACAGTGAGACCTATTCGTTGCTGATCGACACATACATTAAGGACCAGGC 713 Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 || |||| ||| ||| | | |||||| | || || || || |||| || || ||| | Sbjct 712 CGACAAGATGCACCTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAA 653 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTT-GCTGAGCGACTCTTCGCAT 102195 |||||| | ||||||| || | | | | |||| || ||||| | |||| | Sbjct 652 TTGGGCCCTTAAGTGGTGCGACTCGC-GACATGCCTCTTTCGCGGAGCGGTGCATCGCCT 594 Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255 | || || ||||| || |||||| || ||||||||||| || | |||||||||| Sbjct 593 TCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCGCCATCTTCTGGCTCAAGA 534 Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 102315 ||||||| |||||||| |||||||| ||||| ||||||||||| || || ||||| |||| Sbjct 533 AGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGAC 474 Query 102316 TCCACCAAGAGTTTGC 102331 | ||| || ||||| Sbjct 473 TGCACTGCGACTTTGC 458 >seq2764 Length=7933 Score = 120 bits (132), Expect = 4e-22 Identities = 306/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||| | || |||| || || ||||||||| || |||||||| || |||||| Sbjct 4155 TTCGCCGAGAGGCTAATCGCCTTCGCTACTGTTGAGGGGATATTCTTCTCGGGGTCCTTC 4096 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 || || || | ||||| |||||||| ||||||||||| || ||| |||||| || ||| Sbjct 4095 TGTGCCATATTCTGGCTGAAGAAGCGGGGTCTCATGCCTGGACTCACCTTCTCGAATGAG 4036 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG-GT-GGAACTTTTCAAATTAT 102351 || ||| ||| |||||||| | ||| |||||| || | | ||| || | Sbjct 4035 CTGATCAGTCGAGACGAGGGGTTGCACTGCTCATTTGCGTGTCAGCTGTATTCCAA--AC 3978 Query 102352 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAG-GAAGCCGTTGAGATT 102410 | | || | ||| ||| || ||| || | |||| ||||| || || | Sbjct 3977 TCAAAAACAAGCTGACGCAGGAGCATA-TCAATCGCATAATAAGAGAAGCAGTAGATGTC 3919 Query 102411 GAGAAGGGATTCATATTGGATGCCCTT-CCATGCGCTCTCATCGGTATGAATTCTGAAAA 102469 || ||| | ||||| | ||||| ||| || | ||| | ||||| |||||||| | Sbjct 3918 GAAAAGAGCTTCATCTGCGATGCGCTTCCCGTCAGCT-TGATCGGGATGAATTCAGGCCT 3860 Query 102470 GATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGA-TCGGGGTGC-CT 102527 ||| | ||||||| |||| ||| | ||| | || | | | || | ||||| | Sbjct 3859 CATGGGCCAATATATCGAGTTTGTGGCGGATCGTATGCTCA--CCGACTTGGGGTACGAG 3802 Query 102528 CCAATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAG 102587 || ||| | ||||||||| || || | ||||| | || ||||| || || ||| Sbjct 3801 CCGCTTTACAGAAGCAAGAATCCGTTCGATTGGATGGACATGATCAGCCTTGAAGGCAAG 3742 Query 102588 ACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||||| ||||| || |||||||| || || ||| Sbjct 3741 ACAAATTTCTTTGAGAAGAGGGTGGGCGAATAT 3709 >seq40427 Length=10030 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 176023 CTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTT 176082 ||| || ||||| |||| |||||||| ||||| | || | |||||| ||||| ||||| Sbjct 4896 CTTGCCTCCCATTCGACGAGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTT 4955 Query 176083 TGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--TCACCG 176140 || || | ||||| | |||| || || || | | || || |||| || ||| Sbjct 4956 TGTGCCAACGTAGTTCTGTGCCATTCCGATGATAGT-TGAGTGA-AGCGACTGCTCTCCG 5013 Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200 ||||| ||||| | |||| ||| || | || | ||| || || || ||||| | Sbjct 5014 TGGTGATACGCCGAGTGCTCTCCGATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 5073 Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 || | ||||| | ||||||||| ||| |||||||| || || | ||||||||||| Sbjct 5074 TTCAATTTCTTCTTGAAACATGCAAACAAGACCTTGCGCTGTGACGTTTTGAGACCATC 5132 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| || | ||||| ||||| ||||||||||| || ||||||| ||| Sbjct 5781 GGCCAGAAGTGGTGGATGAAATTGATGATGAGGCCCTTGATGTGTGAGCCGTCGTGATCT 5840 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCGAAG 176796 ||||| ||||||||||||| |||| || || || Sbjct 5841 TGATCCGCCATGATCATGAGATGACCGTATCGCAG 5875 >seq14466 Length=1393 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 176023 CTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTT 176082 ||| || ||||| |||| |||||||| ||||| | || | |||||| ||||| ||||| Sbjct 71 CTTGCCTCCCATTCGACGAGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTT 130 Query 176083 TGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT--TCACCG 176140 || || | ||||| | |||| || || || | | || || |||| || ||| Sbjct 131 TGTGCCAACGTAGTTCTGTGCCATTCCGATGATAGT-TGAGTGA-AGCGACTGCTCTCCG 188 Query 176141 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 176200 ||||| ||||| | |||| ||| || | || | ||| || || || ||||| | Sbjct 189 TGGTGATACGCCGAGTGCTCTCCGATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 248 Query 176201 TTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 || | ||||| | ||||||||| ||| |||||||| || || | ||||||||||| Sbjct 249 TTCAATTTCTTCTTGAAACATGCAAACAAGACCTTGCGCTGTGACGTTTTGAGACCATC 307 >seq50892 Length=141790 Score = 95.1 bits (104), Expect = 2e-14 Identities = 192/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| || || || || | | || |||| | || || || ||||| || || Sbjct 2222 ACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGC 2163 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 | | |||| | |||| | | | | |||||||||||| ||||| || || || || Sbjct 2162 ACCAACAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 2103 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 | ||||| || |||||||| || | | ||||||||| |||| | || || Sbjct 2102 TAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTCTACCTAC 2043 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||||||||| |||||||| || || || || || |||||| ||| || || | Sbjct 2042 GGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTGGAATAA 1983 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||| || || || || || | || | ||||||||||||||| Sbjct 1982 ATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 95.1 bits (104), Expect = 2e-14 Identities = 192/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| || || || || | | || |||| | || || || ||||| || || Sbjct 8787 ACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGC 8846 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 | | |||| | |||| | | | | |||||||||||| ||||| || || || || Sbjct 8847 ACCAACAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 8906 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 | ||||| || |||||||| || | | ||||||||| |||| | || || Sbjct 8907 TAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTCTACCTAC 8966 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||||||||| |||||||| || || || || || |||||| ||| || || | Sbjct 8967 GGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTGGAATAA 9026 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||| || || || || || | || | ||||||||||||||| Sbjct 9027 ATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 9071 >seq2068 Length=11277 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 176027 CCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTGTTTGAA 176086 || |||||||| || || |||||||| ||| ||| || || |||||||||||||| Sbjct 4852 CCGCCCATGAGGCGAGTTCCAAACTGGCCAATAGGCAGTAGCAGGTTGATATTGTTTGAT 4911 Query 176087 CCCATGTAGTCATTCGCCA-ACTTGACAATCGTGTCCGCGAGAGAGACTTCACCGTGGTG 176145 |||| | ||| | ||||| ||||| || || | ||| | | || |||||||| Sbjct 4912 CCCACGAAGTTCTGCGCCATACTTG-TGATTGTTGCATGAAGACTGGCCTCTCCGTGGTG 4970 Query 176146 GTACGCACTCTTCTCTGCGACAAATGCC-GCCAACTGCGCCACTTTCATCTCATCCTTGA 176204 || ||| | | ||| ||| || ||| || || ||||| || || ||||| ||||| | Sbjct 4971 ATAGGCAGTGTGCTCCGCG-CAGTAGCCAGCTAATTGCGCAACCTTGATCTCGTCCTTCA 5029 Query 176205 GATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 |||| | ||| || || | || || ||| | |||||| ||||| || || || Sbjct 5030 GATTGCGCTTGAAGCAGGCATGCAAAATCTTTCTTTGCGATGGCTTTAGTCCGTC 5084 >seq24354 Length=8886 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 113142 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCA 113201 ||| || ||||| || |||||||| || ||||||| ||| |||| ||||||||||| Sbjct 8044 AAGGAGCTGTACAAGACGGTTTGGGAGATGAAGATGAGGGACCTCATCGACATGGCCGCG 8103 Query 113202 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 || | || || ||||||||||| || || ||| |||||||||||| Sbjct 8104 GACAGGGGACGGTTCATTGATCAGAGCCAGAGTCTGAATCTATTCA 8149 >seq2697 Length=14000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| || | |||| | ||| ||||||||||| || ||||||| ||| Sbjct 11295 GGCCAGAAGTGGTGGATGAAGTTGATGACGAGGCCCTTGATGTGTGAGCCGTCGTGATCT 11354 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCGAAG 176796 ||||| ||||||||||||| |||| || || || Sbjct 11355 TGATCCGCCATGATCATGAGATGACCGTATCGCAG 11389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620347514722240