Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq34148 132 6e-26 seq45459 129 7e-25 seq4998 129 7e-25 seq2764 129 7e-25 seq2697 105 8e-18 >seq34148 Length=11268 Score = 132 bits (146), Expect = 6e-26 Identities = 272/396 (69%), Gaps = 9/396 (2%) Strand=Plus/Plus Query 11470 CCTTGAACACTGGGGAGAGTCACCTGA-ATCTTACGATCGAAACGACCTGGGCGGAGTAG 11528 ||||||| | |||||| |||| | | ||||| || ||||| || || ||||| || || Sbjct 2048 CCTTGAAGTC-GGGGAG-GTCAACGGTGATCTTGCGGTCGAATCGGCCGGGGCGTAGAAG 2105 Query 11529 AGCATCATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATT 11588 || | || || || || || ||||| |||||||| ||| | || || | | Sbjct 2106 GGCCTGGTCGAGGATGTCAACGCGGTTGGTAGCGGCGATGGTGATGATTCCGGGGTTGCC 2165 Query 11589 GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTT--G 11646 ||||||||||||||| || || | |||||| || ||||| |||||||| ||||| Sbjct 2166 GTCGAAACCGTCCATCTCAACAAGGATCTGGTTAATGGTCTGCTCACGCTCGTCGTTACC 2225 Query 11647 GAGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 | ||| | || || ||||| || |||||||| |||||||||||||| | | Sbjct 2226 GCCGGCGAA--TCCGGCACCACGCTGGCGTCCTACAGCGTCGATCTCATCGATGAAAATG 2283 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || ||| ||||| || | ||||| ||||| | ||||||||| Sbjct 2284 ATGCAGGGGGCGTTCTTCTTGGCCTGGGAAAATATGTCACGGACACGGCTAGCTCCAACA 2343 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTG-AATGAAGGGAACATTAGACTC 11825 || ||||||||||| ||||| | | ||| | | || |||||| || || | ||| Sbjct 2344 CCAACGAACATCTCGACGAACTCGGAACCAG-AGATTGAAATGAAAGGGACTCCTGCCTC 2402 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 ||||| | ||| |||||||| |||||||| || Sbjct 2403 GCCAGCAACGGCCTTGGCGAGGAGGGTCTTACCTGT 2438 >seq45459 Length=4245 Score = 129 bits (142), Expect = 7e-25 Identities = 220/319 (69%), Gaps = 9/319 (3%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || ||||| || || || || ||||| || ||| || || || Sbjct 3268 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACC 3209 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| |||||||| || || ||| ||||| || Sbjct 3208 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAAAT 3149 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTC 119668 |||||| || |||||| |||| ||||| || |||| |||| || ||| Sbjct 3148 GCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGA---GTC 3092 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||||||| || ||||| || ||||| || | ||| || || || | |||||| | Sbjct 3091 GCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTT 3032 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 || || ||| |||| || || |||||||| ||| | || || || || ||||| Sbjct 3031 GAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGT 2972 Query 119789 CTCACCATGAACCATTTCA 119807 ||||| |||| ||||| Sbjct 2971 CTCACTGTGAATGTTTTCA 2953 >seq4998 Length=959 Score = 129 bits (142), Expect = 7e-25 Identities = 220/319 (69%), Gaps = 9/319 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || ||||| || || || || ||||| || ||| || || || Sbjct 457 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGACC 516 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| |||||||| || || ||| ||||| || Sbjct 517 AGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAAAT 576 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTC 119668 |||||| || |||||| |||| ||||| || |||| |||| || ||| Sbjct 577 GCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGA---GTC 633 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 | ||||||| || ||||| || ||||| || | ||| || || || | |||||| | Sbjct 634 GCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTT 693 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 || || ||| |||| || || |||||||| ||| | || || || || ||||| Sbjct 694 GAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAGGT 753 Query 119789 CTCACCATGAACCATTTCA 119807 ||||| |||| ||||| Sbjct 754 CTCACTGTGAATGTTTTCA 772 >seq2764 Length=7933 Score = 129 bits (142), Expect = 7e-25 Identities = 307/455 (67%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| || ||||||||||| || |||||||| ||||| || || || ||| | ||||| Sbjct 3709 ATATTCGCCCACCCTCTTCTCAAAGAAATTTGTCTTGCCTTCAAGGCTGATCATGTCCAT 3768 Query 119267 AAAGTCAAAAGGATTTTTGGAGTTCCAGATTGG-TGGTTGACCAACTTGTTTCAGAAGAC 119325 | || || ||||| ||| | | | || | || |||| | | | || | || Sbjct 3769 CCAATCGAACGGATTCTTGCTTCTGTAAAGCGGCTCGTACCCCAAGTCGGTG-AGCATAC 3827 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||| | ||| |||||||||||| | ||| | |||||||| || || | | Sbjct 3828 GATCCGCCACAAACTCGATATATTGGCCCATGAGGCCTGAATTCATCCCGATCAAGCTG- 3886 Query 119386 ACGGGA-GAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATG-GA 119443 |||||| | |||||| ||||||| |||| |||| || || |||||| | | ||| || Sbjct 3887 ACGGGAAGCGCATCGCAGATGAAGCTCTTTTCGACATCTACTGCTTCTCTTATTATGCGA 3946 Query 119444 GTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTT---AAACAACTCTACGGCAAA 119500 ||| | | ||| || | |||||| | |||||| | ||| || ||||| Sbjct 3947 TTGATATGCTCCTG-CGTCAGCTTGTTTTT---GAGTTTGGAATACAGCTGACACGCAAA 4002 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | || | ||| || || ||| ||| |||||||| |||| ||||||||||| Sbjct 4003 TGAGCAGTGCAACCCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCAT 4062 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||| || |||||||| || || || ||||| || ||||| Sbjct 4063 GAGACCCCGCTTCTTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCTC 4122 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG 119655 ||| ||||| |||| ||| | ||| || |||| Sbjct 4123 AACAGTAGCGAAGGCGATTAGCCTCTCGGCGAAAG 4157 >seq2697 Length=14000 Score = 105 bits (116), Expect = 8e-18 Identities = 168/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 167541 CTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTTATT 167600 |||||| ||||| | || |||||||||||||| | || | ||||| |||||||| || Sbjct 10468 CTTGCCTCCCATTCGACGGGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTT 10527 Query 167601 CGA--CCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCGCCG 167658 ||| | | ||| || | ||||| | || ||| || | || | ||| ||| Sbjct 10528 CGATCCGCAGTAGGAT--TGGGCCATGCCAATGACCGTGCCATTCAATGACATTTCCCCG 10585 Query 167659 TGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCATCT 167718 ||||| || || | ||| | | ||| |||| | ||| |||||||| ||||| | | Sbjct 10586 TGGTGATACGCCGAATGTTCCCCAATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTT 10645 Query 167719 TTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCATC 167777 || | ||||| | |||||| | | ||| |||||||| ||||| |||||||| ||||| Sbjct 10646 TTCAATTTCTTCTTGAAACACGCAAACAAGACCTTGCGCTGAGAGGGTTTGAGCCCATC 10704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588601322917600