Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq45459 134 2e-26 seq4998 134 2e-26 seq2764 116 4e-21 seq50892 109 6e-19 seq43102 109 6e-19 seq48315 91.5 2e-13 seq2697 91.5 2e-13 >seq45459 Length=4245 Score = 134 bits (148), Expect = 2e-26 Identities = 350/526 (67%), Gaps = 22/526 (4%) Strand=Plus/Minus Query 117097 AGGAGACGATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||||| || | |||| | ||||||||||| | |||| | |||||||| ||||| Sbjct 3444 AGGAGACGGTCGG-CACAGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCGAT 3386 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 || | | || |||||||| | || ||| | ||||| ||||| || || | | || Sbjct 3385 AAGTTCAACAGGAAGTGCGTCGACGACAAACTCCTTCTCGATCTCGACAGCGTGGGTTAC 3326 Query 117216 GATGGCGTGGATAGT---TTCGG-----TAGTGGGTCTATTACGCAAAGTCTTGAAGAGC 117267 || || ||| | ||||| | || | || || ||| | ||| Sbjct 3325 AATCTCGACGATCCTGCTTTCGGGCACCTTGTTCACCAGTTTCG---AGTAAAGGAGA-- 3271 Query 117268 TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCAT 117327 || |||||| || ||| || || || || ||||||||||| || |||||||| || Sbjct 3270 --CA-GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAG 3214 Query 117328 AGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG 117387 || || |||||||| || |||||||| | ||| | || |||||||| || ||| |||| Sbjct 3213 AGACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAG 3154 Query 117388 AAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG 117447 || || ||||| || || || || | ||||| ||||| ||| | | | Sbjct 3153 AAAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAG 3094 Query 117448 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 117507 || |||| || | ||||| |||||||| |||| || || || || || | |||||| Sbjct 3093 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 3034 Query 117508 TCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 117567 | | | ||| |||| || | |||||||||||| |||| |||| ||||| Sbjct 3033 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAG 2974 Query 117568 GTTTCGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAA 117611 || || | |||| ||||| | |||| |||| || ||||||| Sbjct 2973 GTCTCACTGTGAATGTTTTCA--ACGGCAATTTGAAATCCGTAGAA 2930 >seq4998 Length=959 Score = 134 bits (148), Expect = 2e-26 Identities = 350/526 (67%), Gaps = 22/526 (4%) Strand=Plus/Plus Query 117097 AGGAGACGATCCGACACATA-CTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 |||||||| || | |||| | ||||||||||| | |||| | |||||||| ||||| Sbjct 281 AGGAGACGGTCGG-CACAGAACTCAATGTACTGGCACATGAGGCCCGAGTTCATGCCGAT 339 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 || | | || |||||||| | || ||| | ||||| ||||| || || | | || Sbjct 340 AAGTTCAACAGGAAGTGCGTCGACGACAAACTCCTTCTCGATCTCGACAGCGTGGGTTAC 399 Query 117216 GATGGCGTGGATAGT---TTCGG-----TAGTGGGTCTATTACGCAAAGTCTTGAAGAGC 117267 || || ||| | ||||| | || | || || ||| | ||| Sbjct 400 AATCTCGACGATCCTGCTTTCGGGCACCTTGTTCACCAGTTTCG---AGTAAAGGAGA-- 454 Query 117268 TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCAT 117327 || |||||| || ||| || || || || ||||||||||| || |||||||| || Sbjct 455 --CA-GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAG 511 Query 117328 AGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG 117387 || || |||||||| || |||||||| | ||| | || |||||||| || ||| |||| Sbjct 512 AGACCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAG 571 Query 117388 AAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG 117447 || || ||||| || || || || | ||||| ||||| ||| | | | Sbjct 572 AAAATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAG 631 Query 117448 TCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 117507 || |||| || | ||||| |||||||| |||| || || || || || | |||||| Sbjct 632 TCGCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCG 691 Query 117508 TCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 117567 | | | ||| |||| || | |||||||||||| |||| |||| ||||| Sbjct 692 TTGAGGAGGTGCATCTTGTCGGCCTGGTCCTTAATGTATGTGTCGATCAGCAACGAATAG 751 Query 117568 GTTTCGCCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAA 117611 || || | |||| ||||| | |||| |||| || ||||||| Sbjct 752 GTCTCACTGTGAATGTTTTCA--ACGGCAATTTGAAATCCGTAGAA 795 >seq2764 Length=7933 Score = 116 bits (128), Expect = 4e-21 Identities = 305/453 (67%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || || | |||||||||||| || ||||| || |||||||| || | ||||| Sbjct 3709 ATATTCGCCCACCCTCTTCTCAAAGAAATTTGTCTTGCCTTCAAGGCTGATCATGTCCAT 3768 Query 117045 AAAGTCAAATGGATTCTTCGCGT-TCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGA 117102 | || || |||||||| || | | ||| || | | ||||||| | | | ||| | | Sbjct 3769 CCAATCGAACGGATTCTT-GCTTCTGTAAAGCGGCTCGTACCCCAAGTCGGT-GAGCATA 3826 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGA-GATT 117161 ||||||| |||| |||| || || | | ||| | || ||||| ||||| | | | Sbjct 3827 CGATCCGCCACAAACTCGATATATTGGCCCATGAGGCCTGAATTCATCCCGATCAAGCTG 3886 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 || || || || || ||||||| | || || | || || || ||| | | ||| Sbjct 3887 ACG-GGAAGCGCATCGCAGATGAAGCTCTTTTCGACATCTACTGCTTCTCTTATTATGCG 3945 Query 117222 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA--GCTC-CACGGCAAA 117278 | |||| || || | | || | || | ||| | ||| |||| |||| Sbjct 3946 ATTGATATGCTCCTGCGTCAGCTTGTTTTTGA--GTTTGGAATACAGCTGACACG-CAAA 4002 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| | ||||| ||||| || || ||||| |||||| || || ||||| Sbjct 4003 TGAGCAGTGCAACCCCTCGTCTCGACTGATCAGCTCATTCGAGAAGGTGAGTCCAGGCAT 4062 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||||||||||||||||| ||| | || || ||||| ||||| |||||||| || ||||| Sbjct 4063 GAGACCCCGCTTCTTCAGCCAGAATATGGCACAGAAGGACCCCGAGAAGAATATCCCCTC 4122 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||| || || || | || | ||||||||| Sbjct 4123 AACAGTAGCGAAGGCGATTAGCCTCTCGGCGAA 4155 >seq50892 Length=141790 Score = 109 bits (120), Expect = 6e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| || || || || | | || |||| | || || || ||||| || || Sbjct 2222 ACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGC 2163 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 | | |||| | |||| | | | | |||||||||||| ||||| || ||||| || Sbjct 2162 ACCAACAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 2103 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 | ||||| || |||||||| || | | ||||||||| |||| | || || Sbjct 2102 TAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTCTACCTAC 2043 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||| |||||||| || |||||||| || |||||| || ||| || | Sbjct 2042 GGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTGGAATAA 1983 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| ||||| | || || | || | ||||||||||||||| Sbjct 1982 ATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 1938 >seq43102 Length=56976 Score = 109 bits (120), Expect = 6e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| || || || || | | || |||| | || || || ||||| || || Sbjct 8787 ACGATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGC 8846 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 | | |||| | |||| | | | | |||||||||||| ||||| || ||||| || Sbjct 8847 ACCAACAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 8906 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 | ||||| || |||||||| || | | ||||||||| |||| | || || Sbjct 8907 TAGTGTTTGCTCACGTTCATCGTTTCCACCACCAACACCAGCACCACGTTCTCTACCTAC 8966 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||| |||||||| || |||||||| || |||||| || ||| || | Sbjct 8967 GGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTGGAATAA 9026 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| ||||| | || || | || | ||||||||||||||| Sbjct 9027 ATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAA 9071 >seq48315 Length=10477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 106455 TTGGA-AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 ||||| |||| ||| || |||| |||||||| || |||| || |||||||| Sbjct 2698 TTGGAGAGGGAGATGGACGCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTGTACTCG 2639 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | ||| || || || | |||||| | ||| ||||| || | |||| ||||| ||| Sbjct 2638 ACAATCTCGGTGCAGAGGTTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 2579 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||||| ||||||||||||||||||||||| || ||||| ||| || | ||| Sbjct 2578 CCGTTGCAGTGGTCCTTGTAGAGCATGTAGGGCGTGCCGGTCTCGACCTGGGAGTCGAGG 2519 Query 106634 ATTGC 106638 || || Sbjct 2518 ATGGC 2514 >seq2697 Length=14000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 168473 CTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTTGTT 168532 ||| || ||||| |||| |||||||||||||| | || | ||||||||| |||||||| Sbjct 10468 CTTGCCTCCCATTCGACGGGTACCAAATTGACCGCTAGGGTAAAGAAGGTTGATGTTGTT 10527 Query 168533 TGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACCATG 168592 || || |||| | |||| || | |||| | || || | ||| || || Sbjct 10528 CGATCCGCAGTAGGATTGGGCCATGCCAATGACCGTGCCATTCAATGACATTTCCCCGTG 10587 Query 168593 GTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTT 168652 ||| ||||| || | ||| | | ||| | || || || || ||||| || || | || Sbjct 10588 GTGATACGCCGAATGTTCCCCAATGTATCCTGCAAGCTGAGCAACCTTGATCTCGTTTTT 10647 Query 168653 GAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATCC 168710 | ||||| | ||| || ||| ||| || || | ||| || || ||||| |||||| Sbjct 10648 CAATTTCTTCTTGAAACACGCAAACAAGACCTTGCGCTGAGAGGGTTTGAGCCCATCC 10705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589605483714080