Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq50892 744 0.0 seq43102 744 0.0 >seq50892 Length=141790 Score = 744 bits (824), Expect = 0.0 Identities = 760/992 (77%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||||| ||| | ||||| ||| | ||| | | || | |||||||| ||| ||| Sbjct 86531 TTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTA 86472 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||| | || | ||||||||||| | | |||||||| | || ||||| || || || Sbjct 86471 ATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCT 86412 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || |||||||| || ||| | ||||| ||||||||| || || | || || |||||| Sbjct 86411 CCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAAC 86352 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 |||||||||||||||||| | || ||||||||| || ||| | |||||||||||||| Sbjct 86351 ATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATC 86292 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||||||| || | |||||||||||||| || |||||||||||||| || | | Sbjct 86291 TGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 86232 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 || |||||| || | || | | ||||||||| | | ||||||||| ||| | Sbjct 86231 TTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGT 86172 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 |||||||| | |||||||||| || || | || || |||||| | ||||| | |||| Sbjct 86171 TTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCA 86112 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 |||||| | ||||||||| | ||||| |||||||||||||||||||||||| |||| || Sbjct 86111 GTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 86052 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || || ||||||||||| ||||||||||| || |||||||| | ||||| || Sbjct 86051 TCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCA 85992 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 ||||| ||||| || || || ||| | |||||||| ||| ||||| || ||||| ||| Sbjct 85991 TTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGT 85932 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 ||| | ||||| ||| | ||||| | || || ||||| | ||||| ||||| ||| Sbjct 85931 TCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGT 85872 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 ||||| |||||||||||||||||||| || || || || || ||||| || ||||| ||| Sbjct 85871 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 85812 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 | ||||||||||| || || |||||||||||| | | | ||||||||| |||| Sbjct 85811 CGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCT 85752 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | |||||| || || | |||||||| ||||||||||| ||||||||||||||||| Sbjct 85751 TTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAAC 85692 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 || ||||| || ||||| |||||||| ||||| ||| | | ||| | ||| ||| Sbjct 85691 TTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACA 85632 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || | | ||||||||||||||||| || |||||||| Sbjct 85631 TGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCG 85572 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||| |||| ||||| || | ||| Sbjct 85571 CACAACTTCCCATTAGATTTAGCTTCAGGTGA 85540 Score = 744 bits (824), Expect = 0.0 Identities = 760/992 (77%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||||| ||| | ||||| ||| | ||| | | || | |||||||| ||| ||| Sbjct 125558 TTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTA 125617 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||| | || | ||||||||||| | | |||||||| | || ||||| || || || Sbjct 125618 ATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCT 125677 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || |||||||| || ||| | ||||| ||||||||| || || | || || |||||| Sbjct 125678 CCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAAC 125737 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 |||||||||||||||||| | || ||||||||| || ||| | |||||||||||||| Sbjct 125738 ATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATC 125797 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||||||| || | |||||||||||||| || |||||||||||||| || | | Sbjct 125798 TGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 125857 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 || |||||| || | || | | ||||||||| | | ||||||||| ||| | Sbjct 125858 TTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGT 125917 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 |||||||| | |||||||||| || || | || || |||||| | ||||| | |||| Sbjct 125918 TTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCA 125977 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 |||||| | ||||||||| | ||||| |||||||||||||||||||||||| |||| || Sbjct 125978 GTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 126037 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || || ||||||||||| ||||||||||| || |||||||| | ||||| || Sbjct 126038 TCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCA 126097 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 ||||| ||||| || || || ||| | |||||||| ||| ||||| || ||||| ||| Sbjct 126098 TTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGT 126157 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 ||| | ||||| ||| | ||||| | || || ||||| | ||||| ||||| ||| Sbjct 126158 TCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGT 126217 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 ||||| |||||||||||||||||||| || || || || || ||||| || ||||| ||| Sbjct 126218 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 126277 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 | ||||||||||| || || |||||||||||| | | | ||||||||| |||| Sbjct 126278 CGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCT 126337 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | |||||| || || | |||||||| ||||||||||| ||||||||||||||||| Sbjct 126338 TTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAAC 126397 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 || ||||| || ||||| |||||||| ||||| ||| | | ||| | ||| ||| Sbjct 126398 TTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACA 126457 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || | | ||||||||||||||||| || |||||||| Sbjct 126458 TGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCG 126517 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||| |||| ||||| || | ||| Sbjct 126518 CACAACTTCCCATTAGATTTAGCTTCAGGTGA 126549 >seq43102 Length=56976 Score = 744 bits (824), Expect = 0.0 Identities = 760/992 (77%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||||| ||| | ||||| ||| | ||| | | || | |||||||| ||| ||| Sbjct 27242 TTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTA 27183 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 ||| | || | ||||||||||| | | |||||||| | || ||||| || || || Sbjct 27182 ATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCT 27123 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || |||||||| || ||| | ||||| ||||||||| || || | || || |||||| Sbjct 27122 CCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAAC 27063 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 |||||||||||||||||| | || ||||||||| || ||| | |||||||||||||| Sbjct 27062 ATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATC 27003 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||||||| || | |||||||||||||| || |||||||||||||| || | | Sbjct 27002 TGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 26943 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 || |||||| || | || | | ||||||||| | | ||||||||| ||| | Sbjct 26942 TTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGT 26883 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 |||||||| | |||||||||| || || | || || |||||| | ||||| | |||| Sbjct 26882 TTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCA 26823 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 |||||| | ||||||||| | ||||| |||||||||||||||||||||||| |||| || Sbjct 26822 GTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATC 26763 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || || ||||||||||| ||||||||||| || |||||||| | ||||| || Sbjct 26762 TCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCA 26703 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 ||||| ||||| || || || ||| | |||||||| ||| ||||| || ||||| ||| Sbjct 26702 TTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGT 26643 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 ||| | ||||| ||| | ||||| | || || ||||| | ||||| ||||| ||| Sbjct 26642 TCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGT 26583 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 ||||| |||||||||||||||||||| || || || || || ||||| || ||||| ||| Sbjct 26582 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGT 26523 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 | ||||||||||| || || |||||||||||| | | | ||||||||| |||| Sbjct 26522 CGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCT 26463 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | |||||| || || | |||||||| ||||||||||| ||||||||||||||||| Sbjct 26462 TTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAAC 26403 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 || ||||| || ||||| |||||||| ||||| ||| | | ||| | ||| ||| Sbjct 26402 TTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACA 26343 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || | | ||||||||||||||||| || |||||||| Sbjct 26342 TGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCG 26283 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||||||| |||| ||||| || | ||| Sbjct 26282 CACAACTTCCCATTAGATTTAGCTTCAGGTGA 26251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564082530476160