Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq50892 735 0.0 seq43102 735 0.0 >seq50892 Length=141790 Score = 735 bits (814), Expect = 0.0 Identities = 769/1010 (76%), Gaps = 0/1010 (0%) Strand=Plus/Minus Query 215303 TGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCT 215362 ||| |||| |||||| || ||| | ||| | |||||||||||| | ||| ||||| Sbjct 86522 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 86463 Query 215363 TGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGAT 215422 | | | ||||||| ||||||||||| | || || ||||| || ||||| || ||| Sbjct 86462 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 86403 Query 215423 ATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 215482 ||||| || ||| | || ||||| || ||||||||| | || ||||||||||||||||| Sbjct 86402 ATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCA 86343 Query 215483 GGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 ||||| ||| | |||||||||||||| || || | ||||||||||| |||||||||||| Sbjct 86342 GGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCA 86283 Query 215543 GCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTC 215602 || ||||||| || ||| | ||||| ||||| |||| |||| | | | || |||||| Sbjct 86282 GCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTC 86223 Query 215603 CTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATG 215662 | | ||| || | ||| || | | |||||| | ||| | ||||||||| Sbjct 86222 TTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 86163 Query 215663 AGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTT 215722 | |||||||||| || || | ||| || || ||| | || || | |||||||||| | Sbjct 86162 CGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTA 86103 Query 215723 GTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACA 215782 || || ||| ||||||| |||||||||||||||| |||||| | || |||||||| || Sbjct 86102 GTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 86043 Query 215783 TTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATG 215842 || |||| |||||| || ||||| ||||| |||||||| | |||||||||||||||||| Sbjct 86042 TTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATG 85983 Query 215843 TTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTT 215902 ||||| |||||||| ||||||||||| || ||| ||| |||||||||||| | || Sbjct 85982 GCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTA 85923 Query 215903 ACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTC 215962 || ||| | ||||| | || |||||||| | ||||| |||||||||||||| ||| Sbjct 85922 ACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTC 85863 Query 215963 GGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATC 216022 || ||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 85862 GGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATC 85803 Query 216023 TTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCT 216082 ||||||||||| || |||||||||||| | | | ||||||||| | || || || Sbjct 85802 TTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCA 85743 Query 216083 GTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGT 216142 ||| | |||||||| |||| | |||||| | || ||||| |||||| | |||||| Sbjct 85742 GTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGT 85683 Query 216143 TTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGAC 216202 |||||||||||||| ||||| || || | ||| |||||| || ||||| || Sbjct 85682 TTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGAT 85623 Query 216203 GTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | ||||| | || | | |||||||||||||||||||| |||||||| ||||||||| Sbjct 85622 ATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTC 85563 Query 216263 CCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCACC 216312 |||||||| || ||| | | ||| | |||||||||||| || || || Sbjct 85562 CCATTAGATTTAGCTTCAGGTGATGTATTACCAGTTGCTTTCACAGCTCC 85513 Score = 735 bits (814), Expect = 0.0 Identities = 769/1010 (76%), Gaps = 0/1010 (0%) Strand=Plus/Plus Query 215303 TGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCT 215362 ||| |||| |||||| || ||| | ||| | |||||||||||| | ||| ||||| Sbjct 125567 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 125626 Query 215363 TGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGAT 215422 | | | ||||||| ||||||||||| | || || ||||| || ||||| || ||| Sbjct 125627 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 125686 Query 215423 ATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 215482 ||||| || ||| | || ||||| || ||||||||| | || ||||||||||||||||| Sbjct 125687 ATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCA 125746 Query 215483 GGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 ||||| ||| | |||||||||||||| || || | ||||||||||| |||||||||||| Sbjct 125747 GGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCA 125806 Query 215543 GCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTC 215602 || ||||||| || ||| | ||||| ||||| |||| |||| | | | || |||||| Sbjct 125807 GCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTC 125866 Query 215603 CTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATG 215662 | | ||| || | ||| || | | |||||| | ||| | ||||||||| Sbjct 125867 TTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 125926 Query 215663 AGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTT 215722 | |||||||||| || || | ||| || || ||| | || || | |||||||||| | Sbjct 125927 CGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTA 125986 Query 215723 GTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACA 215782 || || ||| ||||||| |||||||||||||||| |||||| | || |||||||| || Sbjct 125987 GTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 126046 Query 215783 TTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATG 215842 || |||| |||||| || ||||| ||||| |||||||| | |||||||||||||||||| Sbjct 126047 TTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATG 126106 Query 215843 TTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTT 215902 ||||| |||||||| ||||||||||| || ||| ||| |||||||||||| | || Sbjct 126107 GCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTA 126166 Query 215903 ACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTC 215962 || ||| | ||||| | || |||||||| | ||||| |||||||||||||| ||| Sbjct 126167 ACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTC 126226 Query 215963 GGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATC 216022 || ||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 126227 GGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATC 126286 Query 216023 TTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCT 216082 ||||||||||| || |||||||||||| | | | ||||||||| | || || || Sbjct 126287 TTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCA 126346 Query 216083 GTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGT 216142 ||| | |||||||| |||| | |||||| | || ||||| |||||| | |||||| Sbjct 126347 GTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGT 126406 Query 216143 TTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGAC 216202 |||||||||||||| ||||| || || | ||| |||||| || ||||| || Sbjct 126407 TTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGAT 126466 Query 216203 GTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | ||||| | || | | |||||||||||||||||||| |||||||| ||||||||| Sbjct 126467 ATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTC 126526 Query 216263 CCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCACC 216312 |||||||| || ||| | | ||| | |||||||||||| || || || Sbjct 126527 CCATTAGATTTAGCTTCAGGTGATGTATTACCAGTTGCTTTCACAGCTCC 126576 >seq43102 Length=56976 Score = 735 bits (814), Expect = 0.0 Identities = 769/1010 (76%), Gaps = 0/1010 (0%) Strand=Plus/Minus Query 215303 TGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCT 215362 ||| |||| |||||| || ||| | ||| | |||||||||||| | ||| ||||| Sbjct 27233 TGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCT 27174 Query 215363 TGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGAT 215422 | | | ||||||| ||||||||||| | || || ||||| || ||||| || ||| Sbjct 27173 TTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGAT 27114 Query 215423 ATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 215482 ||||| || ||| | || ||||| || ||||||||| | || ||||||||||||||||| Sbjct 27113 ATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCA 27054 Query 215483 GGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 ||||| ||| | |||||||||||||| || || | ||||||||||| |||||||||||| Sbjct 27053 GGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCA 26994 Query 215543 GCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTC 215602 || ||||||| || ||| | ||||| ||||| |||| |||| | | | || |||||| Sbjct 26993 GCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTC 26934 Query 215603 CTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATG 215662 | | ||| || | ||| || | | |||||| | ||| | ||||||||| Sbjct 26933 TTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATG 26874 Query 215663 AGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTT 215722 | |||||||||| || || | ||| || || ||| | || || | |||||||||| | Sbjct 26873 CGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTA 26814 Query 215723 GTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACA 215782 || || ||| ||||||| |||||||||||||||| |||||| | || |||||||| || Sbjct 26813 GTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACT 26754 Query 215783 TTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATG 215842 || |||| |||||| || ||||| ||||| |||||||| | |||||||||||||||||| Sbjct 26753 TTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATG 26694 Query 215843 TTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTT 215902 ||||| |||||||| ||||||||||| || ||| ||| |||||||||||| | || Sbjct 26693 GCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTA 26634 Query 215903 ACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTC 215962 || ||| | ||||| | || |||||||| | ||||| |||||||||||||| ||| Sbjct 26633 ACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTC 26574 Query 215963 GGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATC 216022 || ||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 26573 GGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATC 26514 Query 216023 TTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCT 216082 ||||||||||| || |||||||||||| | | | ||||||||| | || || || Sbjct 26513 TTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCA 26454 Query 216083 GTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGT 216142 ||| | |||||||| |||| | |||||| | || ||||| |||||| | |||||| Sbjct 26453 GTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGT 26394 Query 216143 TTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGAC 216202 |||||||||||||| ||||| || || | ||| |||||| || ||||| || Sbjct 26393 TTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGAT 26334 Query 216203 GTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTC 216262 | ||||| | || | | |||||||||||||||||||| |||||||| ||||||||| Sbjct 26333 ATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTC 26274 Query 216263 CCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCACC 216312 |||||||| || ||| | | ||| | |||||||||||| || || || Sbjct 26273 CCATTAGATTTAGCTTCAGGTGATGTATTACCAGTTGCTTTCACAGCTCC 26224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744607616340160