Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq50892 700 0.0 seq43102 700 0.0 >seq50892 Length=141790 Score = 700 bits (776), Expect = 0.0 Identities = 743/978 (76%), Gaps = 6/978 (1%) Strand=Plus/Minus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | ||||| || | ||||| | || | |||||||| ||| || ||| | || Sbjct 86523 TTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCC 86464 Query 169758 ATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 | ||||| |||| | | || || ||| | ||||| ||||||||||| || || || Sbjct 86463 TTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGA 86404 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 |||||||| ||| | ||||| ||||||||||| || | || ||||||||||||||||| Sbjct 86403 TATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTC 86344 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 ||||||||| | || ||||||||| || ||| | |||||||| || || |||||||| Sbjct 86343 AGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGC 86284 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 ||| | | ||||||||||| || |||||||||||||| |||||| | | || ||||| Sbjct 86283 AGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTT 86224 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | | || | | ||||||||| | | |||||| || |||||||||||||| Sbjct 86223 CTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTAT 86164 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 |||||||||||||| ||||||| ||||||||||| ||||||| | || |||||||| Sbjct 86163 GCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTT 86104 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 ||| || || ||||||| || |||||||| || || |||||| |||||||||| ||||| Sbjct 86103 AGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 86044 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 |||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || Sbjct 86043 TTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACAT 85984 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGT 170297 ||| || ||||||||| | ||||| || | | ||| || |||||||||||| | || Sbjct 85983 GGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGT 85924 Query 170298 AACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATT 170357 ||| ||| | ||||| | || ||||| || ||||| ||| ||||| || |||||||| Sbjct 85923 AACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATT 85864 Query 170358 CGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTAT 170417 ||| |||||||||||||| |||||||| || || ||||| || ||||||||| | | || Sbjct 85863 CGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAAT 85804 Query 170418 CTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCC 170477 ||||||||| ||| || ||||| ||| | | ||||||||| | ||| || || Sbjct 85803 CTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCC 85744 Query 170478 TGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGG 170537 || || | |||||||||||||| ||||||||| | ||||||||||| ||| | || || Sbjct 85743 AGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGG 85684 Query 170538 ATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACATGGGC 170594 || ||||||||||| || | || ||| ||| ||| || || |||||||| Sbjct 85683 TTTCAACTTCAACCAATCTGTTGTTGAT---TCTCAAGGTCGTGTTATTAACACATGGGC 85627 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 || | ||||| | || | ||||||||||||||||||| || ||||| || ||||| Sbjct 85626 TGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 85567 Query 170655 CTTCCCACTTGACTTGGC 170672 ||||||| | || || || Sbjct 85566 CTTCCCATTAGATTTAGC 85549 Score = 700 bits (776), Expect = 0.0 Identities = 743/978 (76%), Gaps = 6/978 (1%) Strand=Plus/Plus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | ||||| || | ||||| | || | |||||||| ||| || ||| | || Sbjct 125566 TTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCC 125625 Query 169758 ATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 | ||||| |||| | | || || ||| | ||||| ||||||||||| || || || Sbjct 125626 TTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGA 125685 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 |||||||| ||| | ||||| ||||||||||| || | || ||||||||||||||||| Sbjct 125686 TATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTC 125745 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 ||||||||| | || ||||||||| || ||| | |||||||| || || |||||||| Sbjct 125746 AGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGC 125805 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 ||| | | ||||||||||| || |||||||||||||| |||||| | | || ||||| Sbjct 125806 AGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTT 125865 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | | || | | ||||||||| | | |||||| || |||||||||||||| Sbjct 125866 CTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTAT 125925 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 |||||||||||||| ||||||| ||||||||||| ||||||| | || |||||||| Sbjct 125926 GCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTT 125985 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 ||| || || ||||||| || |||||||| || || |||||| |||||||||| ||||| Sbjct 125986 AGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 126045 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 |||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || Sbjct 126046 TTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACAT 126105 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGT 170297 ||| || ||||||||| | ||||| || | | ||| || |||||||||||| | || Sbjct 126106 GGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGT 126165 Query 170298 AACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATT 170357 ||| ||| | ||||| | || ||||| || ||||| ||| ||||| || |||||||| Sbjct 126166 AACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATT 126225 Query 170358 CGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTAT 170417 ||| |||||||||||||| |||||||| || || ||||| || ||||||||| | | || Sbjct 126226 CGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAAT 126285 Query 170418 CTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCC 170477 ||||||||| ||| || ||||| ||| | | ||||||||| | ||| || || Sbjct 126286 CTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCC 126345 Query 170478 TGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGG 170537 || || | |||||||||||||| ||||||||| | ||||||||||| ||| | || || Sbjct 126346 AGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGG 126405 Query 170538 ATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACATGGGC 170594 || ||||||||||| || | || ||| ||| ||| || || |||||||| Sbjct 126406 TTTCAACTTCAACCAATCTGTTGTTGAT---TCTCAAGGTCGTGTTATTAACACATGGGC 126462 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 || | ||||| | || | ||||||||||||||||||| || ||||| || ||||| Sbjct 126463 TGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 126522 Query 170655 CTTCCCACTTGACTTGGC 170672 ||||||| | || || || Sbjct 126523 CTTCCCATTAGATTTAGC 126540 >seq43102 Length=56976 Score = 700 bits (776), Expect = 0.0 Identities = 743/978 (76%), Gaps = 6/978 (1%) Strand=Plus/Minus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | ||||| || | ||||| | || | |||||||| ||| || ||| | || Sbjct 27234 TTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCC 27175 Query 169758 ATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 | ||||| |||| | | || || ||| | ||||| ||||||||||| || || || Sbjct 27174 TTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGA 27115 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 |||||||| ||| | ||||| ||||||||||| || | || ||||||||||||||||| Sbjct 27114 TATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTC 27055 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 ||||||||| | || ||||||||| || ||| | |||||||| || || |||||||| Sbjct 27054 AGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGC 26995 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 ||| | | ||||||||||| || |||||||||||||| |||||| | | || ||||| Sbjct 26994 AGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTT 26935 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | | || | | ||||||||| | | |||||| || |||||||||||||| Sbjct 26934 CTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTAT 26875 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 |||||||||||||| ||||||| ||||||||||| ||||||| | || |||||||| Sbjct 26874 GCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTT 26815 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 ||| || || ||||||| || |||||||| || || |||||| |||||||||| ||||| Sbjct 26814 AGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 26755 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 |||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || Sbjct 26754 TTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACAT 26695 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGT 170297 ||| || ||||||||| | ||||| || | | ||| || |||||||||||| | || Sbjct 26694 GGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGT 26635 Query 170298 AACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATT 170357 ||| ||| | ||||| | || ||||| || ||||| ||| ||||| || |||||||| Sbjct 26634 AACTTCTAGTTTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATT 26575 Query 170358 CGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTAT 170417 ||| |||||||||||||| |||||||| || || ||||| || ||||||||| | | || Sbjct 26574 CGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAAT 26515 Query 170418 CTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCC 170477 ||||||||| ||| || ||||| ||| | | ||||||||| | ||| || || Sbjct 26514 CTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCC 26455 Query 170478 TGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGG 170537 || || | |||||||||||||| ||||||||| | ||||||||||| ||| | || || Sbjct 26454 AGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGG 26395 Query 170538 ATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACATGGGC 170594 || ||||||||||| || | || ||| ||| ||| || || |||||||| Sbjct 26394 TTTCAACTTCAACCAATCTGTTGTTGAT---TCTCAAGGTCGTGTTATTAACACATGGGC 26338 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 || | ||||| | || | ||||||||||||||||||| || ||||| || ||||| Sbjct 26337 TGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 26278 Query 170655 CTTCCCACTTGACTTGGC 170672 ||||||| | || || || Sbjct 26277 CTTCCCATTAGATTTAGC 26260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582477221244800