Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq18597 120 7e-22 seq9453 111 3e-19 seq33104 98.7 2e-15 seq20946 84.2 5e-11 >seq18597 Length=5183 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | || || | ||||| |||||||| Sbjct 2873 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTG 2932 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || ||||| || || || ||||| || ||||| || || || Sbjct 2933 CTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 2992 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || |||||||| || || |||||||| | |||||| || || Sbjct 2993 CGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTCCCGGT 3052 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 3053 CAGGGTCTTAACAAAGATCTGCAT 3076 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| || | || || | || || |||||||| Sbjct 3101 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 3160 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || ||||| || || || || || || ||||| || || || Sbjct 3161 CTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCCTGGATCTT 3220 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || |||||||| || || |||||||| | |||||| || || Sbjct 3221 CGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTCTTCCCGGT 3280 Query 195117 CAAAGTTTTTACGAACACTTGCA 195139 || || || ||||| | |||| Sbjct 3281 CAGGGTCTTGACGAAAATCTGCA 3303 >seq9453 Length=4450 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | || || | || || ||| Sbjct 1104 ACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCG 1045 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || ||||| || || || ||||| || ||||| || Sbjct 1044 AGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCCTGG 985 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || |||||||| || || || ||||| | || || Sbjct 984 ATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTTTTG 925 Query 195112 CCTGTC 195117 |||||| Sbjct 924 CCTGTC 919 >seq33104 Length=5523 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || ||||| || || ||||| || || ||||| ||||| | ||| || Sbjct 3252 TCGGAGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGAAAGTGT 3193 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || || || || | | ||||| || || |||||||| Sbjct 3192 ACGGCCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGGAATGCC 3133 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| || || || || ||| ||| || || ||||| ||||| Sbjct 3132 TTCCTTATCCTGGATCTTTGTCTTAACATTGTCAATTGTGTC 3091 >seq20946 Length=4204 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194962 TTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGT 195021 ||||| || ||| || | || || ||||||||||| || | ||| || || || ||| Sbjct 8 TTGTAGTCCAAAAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGTGAAAATCAGACGCTGT 67 Query 195022 TGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || ||||| ||||| || | ||| || || || ||||||||| | || || ||| Sbjct 68 TGATCAGGAGGGATGCCCTCCTCGTCCTGGATCTTCGCCTTGACGTTGTTGATCGTTTCC 127 Query 195082 GAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || |||||||| | |||| || |||| || || ||||| | ||||| Sbjct 128 GACGGGTCGACGTCAAGGGTGATGATCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108758158362164