Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq18597 100 2e-16 seq18371 84.2 1e-11 seq10981 84.2 1e-11 >seq18597 Length=5183 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||| ||| | || |||| || Sbjct 2868 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCG 2927 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || || || || | || | ||||||||||| Sbjct 2928 AGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGG 2987 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | |||| || | |||||| || | ||| || || || Sbjct 2988 ATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTCTTC 3047 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||||||||||||| Sbjct 3048 CCGGTCAGGGTCTTAACAAAGATCTGCATA 3077 >seq18371 Length=23815 Score = 84.2 bits (92), Expect = 1e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| || | || ||| ||||||||||| || ||||| | | | ||| |||| Sbjct 23788 CAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATC 23729 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||||||||| || || |||| || || || |||| | |||||||||||| Sbjct 23728 CTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTTGTC 23669 Query 34889 GCTAATCTTCTGT-TTGACG 34907 ||||| ||| |||||| Sbjct 23668 CTGGATCTT-TGTCTTGACG 23650 >seq10981 Length=11828 Score = 84.2 bits (92), Expect = 1e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| || | || ||| ||||||||||| || ||||| | | | ||| |||| Sbjct 2388 CAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATC 2329 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || |||||||| || || |||| || || ||| |||| | |||||||||||| Sbjct 2328 CTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGGATCCCCTCCTTGTC 2269 Query 34889 GCTAATCTTCTGT-TTGACG 34907 ||||| ||| |||||| Sbjct 2268 CTGGATCTT-TGTCTTGACG 2250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324432247226976