Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq50892 650 0.0 seq43102 650 0.0 >seq50892 Length=141790 Score = 650 bits (720), Expect = 0.0 Identities = 745/1000 (75%), Gaps = 6/1000 (1%) Strand=Plus/Plus Query 83968 CTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAA 84027 |||| || | ||| || |||||||| || ||||||||||||||||| ||||||||||| | Sbjct 85544 CTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTA 85603 Query 84028 GCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAA 84087 | ||||| |||| | ||| ||||| || || | |||||| ||| ||| |||| Sbjct 85604 AATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAA 85663 Query 84088 GACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAG 84147 | || |||||||| || || || | || |||||||| || |||| ||||| || || Sbjct 85664 CAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAG 85723 Query 84148 CAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGT 84207 ||||| || || | |||||||| ||| ||||| ||||| | || ||| |||| Sbjct 85724 TTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGT 85783 Query 84208 TGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTAT 84267 |||| ||||| || |||||||| | |||||| ||||| ||||| ||||| || || || | Sbjct 85784 TGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 85843 Query 84268 AAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTT 84327 ||||||| |||||||||||||| |||||||| ||||| ||| | ||||| || |||| Sbjct 85844 AAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTT 85903 Query 84328 CTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGA 84387 | ||||||| | |||||| || | |||||| ||||| ||| ||||| || ||||||| Sbjct 85904 CACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGA 85963 Query 84388 ATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGA 84447 ||||||||||||| || |||||| || || ||||| | |||||| ||||| || |||| Sbjct 85964 ATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGA 86023 Query 84448 AGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAAC 84507 | || | |||| |||| || || || |||||||| | ||||| |||||||||||||||| Sbjct 86024 ATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 86083 Query 84508 CTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAG 84567 |||| |||| || || || | |||||| ||||| || ||||| |||||||||||| | | Sbjct 86084 CTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATG 86143 Query 84568 CAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGT 84627 | || ||||||| ||||||||||| | ||| || | |||||||||||||||||||| Sbjct 86144 CTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGT 86203 Query 84628 AA---GCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTAT 84684 || |||| |||| | | |||||| || || | | ||| ||||| ||||| || | Sbjct 86204 AACTTGCAA---CACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGT 86260 Query 84685 ATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCAT 84744 ||| ||| || || | ||||||||||| || || ||||| || | ||||||||| | Sbjct 86261 ATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGT 86320 Query 84745 TAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGA 84804 | || || | || ||||| || ||||||||||| ||||| | | |||||| || | Sbjct 86321 TTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTA 86380 Query 84805 CTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAAC 84864 |||| ||||||||||| || ||||| ||||| || || | | || || |||||||||| Sbjct 86381 CTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAAC 86440 Query 84865 AGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATAC 84924 | ||| || | | || |||| ||| | | ||||||||||| | || | || Sbjct 86441 AAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAAC 86500 Query 84925 GGTTGTTAGTGGAGGTGACCCAATCACAGAAGTTCTGCCA 84964 |||| | ||| || | |||| | |||||| || ||| Sbjct 86501 GGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 86540 Score = 650 bits (720), Expect = 0.0 Identities = 745/1000 (75%), Gaps = 6/1000 (1%) Strand=Plus/Minus Query 83968 CTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAA 84027 |||| || | ||| || |||||||| || ||||||||||||||||| ||||||||||| | Sbjct 126545 CTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTA 126486 Query 84028 GCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAA 84087 | ||||| |||| | ||| ||||| || || | |||||| ||| ||| |||| Sbjct 126485 AATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAA 126426 Query 84088 GACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAG 84147 | || |||||||| || || || | || |||||||| || |||| ||||| || || Sbjct 126425 CAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAG 126366 Query 84148 CAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGT 84207 ||||| || || | |||||||| ||| ||||| ||||| | || ||| |||| Sbjct 126365 TTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGT 126306 Query 84208 TGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTAT 84267 |||| ||||| || |||||||| | |||||| ||||| ||||| ||||| || || || | Sbjct 126305 TGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 126246 Query 84268 AAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTT 84327 ||||||| |||||||||||||| |||||||| ||||| ||| | ||||| || |||| Sbjct 126245 AAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTT 126186 Query 84328 CTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGA 84387 | ||||||| | |||||| || | |||||| ||||| ||| ||||| || ||||||| Sbjct 126185 CACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGA 126126 Query 84388 ATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGA 84447 ||||||||||||| || |||||| || || ||||| | |||||| ||||| || |||| Sbjct 126125 ATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGA 126066 Query 84448 AGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAAC 84507 | || | |||| |||| || || || |||||||| | ||||| |||||||||||||||| Sbjct 126065 ATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 126006 Query 84508 CTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAG 84567 |||| |||| || || || | |||||| ||||| || ||||| |||||||||||| | | Sbjct 126005 CTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATG 125946 Query 84568 CAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGT 84627 | || ||||||| ||||||||||| | ||| || | |||||||||||||||||||| Sbjct 125945 CTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGT 125886 Query 84628 AA---GCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTAT 84684 || |||| |||| | | |||||| || || | | ||| ||||| ||||| || | Sbjct 125885 AACTTGCAA---CACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGT 125829 Query 84685 ATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCAT 84744 ||| ||| || || | ||||||||||| || || ||||| || | ||||||||| | Sbjct 125828 ATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGT 125769 Query 84745 TAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGA 84804 | || || | || ||||| || ||||||||||| ||||| | | |||||| || | Sbjct 125768 TTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTA 125709 Query 84805 CTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAAC 84864 |||| ||||||||||| || ||||| ||||| || || | | || || |||||||||| Sbjct 125708 CTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAAC 125649 Query 84865 AGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATAC 84924 | ||| || | | || |||| ||| | | ||||||||||| | || | || Sbjct 125648 AAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAAC 125589 Query 84925 GGTTGTTAGTGGAGGTGACCCAATCACAGAAGTTCTGCCA 84964 |||| | ||| || | |||| | |||||| || ||| Sbjct 125588 GGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 125549 >seq43102 Length=56976 Score = 650 bits (720), Expect = 0.0 Identities = 745/1000 (75%), Gaps = 6/1000 (1%) Strand=Plus/Plus Query 83968 CTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAA 84027 |||| || | ||| || |||||||| || ||||||||||||||||| ||||||||||| | Sbjct 26255 CTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTA 26314 Query 84028 GCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAA 84087 | ||||| |||| | ||| ||||| || || | |||||| ||| ||| |||| Sbjct 26315 AATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAA 26374 Query 84088 GACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAG 84147 | || |||||||| || || || | || |||||||| || |||| ||||| || || Sbjct 26375 CAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAG 26434 Query 84148 CAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGT 84207 ||||| || || | |||||||| ||| ||||| ||||| | || ||| |||| Sbjct 26435 TTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGT 26494 Query 84208 TGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTAT 84267 |||| ||||| || |||||||| | |||||| ||||| ||||| ||||| || || || | Sbjct 26495 TGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 26554 Query 84268 AAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTT 84327 ||||||| |||||||||||||| |||||||| ||||| ||| | ||||| || |||| Sbjct 26555 AAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTT 26614 Query 84328 CTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGA 84387 | ||||||| | |||||| || | |||||| ||||| ||| ||||| || ||||||| Sbjct 26615 CACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGA 26674 Query 84388 ATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGA 84447 ||||||||||||| || |||||| || || ||||| | |||||| ||||| || |||| Sbjct 26675 ATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGA 26734 Query 84448 AGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAAC 84507 | || | |||| |||| || || || |||||||| | ||||| |||||||||||||||| Sbjct 26735 ATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 26794 Query 84508 CTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAG 84567 |||| |||| || || || | |||||| ||||| || ||||| |||||||||||| | | Sbjct 26795 CTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATG 26854 Query 84568 CAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGT 84627 | || ||||||| ||||||||||| | ||| || | |||||||||||||||||||| Sbjct 26855 CTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGT 26914 Query 84628 AA---GCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTAT 84684 || |||| |||| | | |||||| || || | | ||| ||||| ||||| || | Sbjct 26915 AACTTGCAA---CACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGT 26971 Query 84685 ATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCAT 84744 ||| ||| || || | ||||||||||| || || ||||| || | ||||||||| | Sbjct 26972 ATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGT 27031 Query 84745 TAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGA 84804 | || || | || ||||| || ||||||||||| ||||| | | |||||| || | Sbjct 27032 TTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTA 27091 Query 84805 CTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAAC 84864 |||| ||||||||||| || ||||| ||||| || || | | || || |||||||||| Sbjct 27092 CTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAAC 27151 Query 84865 AGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATAC 84924 | ||| || | | || |||| ||| | | ||||||||||| | || | || Sbjct 27152 AAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAAC 27211 Query 84925 GGTTGTTAGTGGAGGTGACCCAATCACAGAAGTTCTGCCA 84964 |||| | ||| || | |||| | |||||| || ||| Sbjct 27212 GGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 27251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570910184299360