Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq50892 178 1e-38 seq43102 178 1e-38 >seq50892 Length=141790 Score = 178 bits (196), Expect = 1e-38 Identities = 338/495 (68%), Gaps = 17/495 (3%) Strand=Plus/Minus Query 552066 CCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTG 552125 || || ||| ||| ||||| |||| |||| | ||| |||| | | ||||| | || Sbjct 101080 CCGGTTGAAAAAGCTTTAAAAGATGCAAAATTAGATCAATCTGGAATTAATGAAGTCGTT 101021 Query 552126 CTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT-TATTTCAA 552184 | || ||||| || || | ||||| || | ||| | ||||| | ||| | Sbjct 101020 TTAGTAGGTGGTTCAACTCGTATTCCAGCTATACAAGAATT----AGTTCAATCTTTAAC 100965 Query 552185 TGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAAT 552244 ||| |||||| |||| || || ||||||||||| | ||| || |||||| || || Sbjct 100964 TGGAAAAAAACCAAATAAATCAGTAAATCCAGATGAAGTTGTCGCAATTGGTGCAGCTAT 100905 Query 552245 TCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGA 552304 |||||| | |||| | | || ||||| ||| | |||| || | |||| Sbjct 100904 TCAAGCCGGTATTTTAGCAGG---------TGAAATC--ACAGA-TATTTTATTATTAGA 100857 Query 552305 TGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGA 552364 ||||||||| |||| |||||| | |||||||| || ||||||||||| || ||||| | Sbjct 100856 TGTTACTCCATTATCACTTGGTGTCGAAACAGTAGGTGGTATTATGACAAAACTTATTGC 100797 Query 552365 TAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCA 552424 | ||||||| || |||||| ||||||||| ||||||| || ||||||| || Sbjct 100796 TCGAAATACAACAATTCCTGTTAAAAAATCAGAATTATTTTCAACCGCAGCAGATAACCA 100737 Query 552425 AACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCA 552484 ||| ||| |||||| | || ||||||||||| || | || | ||||| Sbjct 100736 AACAAACGTTGAAATTCATGTATTACAAGGAGAAAGAGAAATTGTTAGTGGAAATAAGAG 100677 Query 552485 ACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGA 552544 || || | |||||| |||||||| |||||| ||||| || || |||||||| Sbjct 100676 TCTAGGAAATTTTAAATTAGAAGGAATTCCTGAAGCTCCAAAAGGTCGTCCACAAATTGA 100617 Query 552545 AGTTACTTTCGATAT 552559 ||| || || ||||| Sbjct 100616 AGTGACATTTGATAT 100602 Score = 120 bits (132), Expect = 2e-21 Identities = 127/167 (76%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||| || || | |||||||| |||||||||||||||||||||||||| |||||| Sbjct 101626 GGACAAGATGTGACTAAAGCAGTAATTACTGTACCAGCATATTTTAATGACTCTCAACGT 101567 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 || || || ||||| || |||||||| || | ||||| || ||||| |||||| Sbjct 101566 CAGGCAACAGTTGATGCAGGTAAAATTGCTGGTATTGAAGTTCTACGAATTATTAATGAA 101507 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGAT---AAACATAATGA 550545 || || || ||| || | || ||||| | ||| ||||| ||||| Sbjct 101506 CCAACAGCAGCTTCATTAGCTTATGGGTTAGATAAGAAACAAAATGA 101460 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 ||||||||||||||||| ||||||||||| ||||| ||| | ||| | | || || Sbjct 101481 CCATAAGCTAATGAAGCTGCTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCA 101540 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 ||||| |||||| | || || |||||||| | |||||||||||||| || |||||| Sbjct 101541 ATTTTACCTGCATCAACTGTTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTA 101600 Query 361826 ATCACTGCTTT 361836 || |||||||| Sbjct 101601 ATTACTGCTTT 101611 >seq43102 Length=56976 Score = 178 bits (196), Expect = 1e-38 Identities = 338/495 (68%), Gaps = 17/495 (3%) Strand=Plus/Plus Query 552066 CCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTG 552125 || || ||| ||| ||||| |||| |||| | ||| |||| | | ||||| | || Sbjct 51721 CCGGTTGAAAAAGCTTTAAAAGATGCAAAATTAGATCAATCTGGAATTAATGAAGTCGTT 51780 Query 552126 CTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT-TATTTCAA 552184 | || ||||| || || | ||||| || | ||| | ||||| | ||| | Sbjct 51781 TTAGTAGGTGGTTCAACTCGTATTCCAGCTATACAAGAATT----AGTTCAATCTTTAAC 51836 Query 552185 TGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAAT 552244 ||| |||||| |||| || || ||||||||||| | ||| || |||||| || || Sbjct 51837 TGGAAAAAAACCAAATAAATCAGTAAATCCAGATGAAGTTGTCGCAATTGGTGCAGCTAT 51896 Query 552245 TCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGA 552304 |||||| | |||| | | || ||||| ||| | |||| || | |||| Sbjct 51897 TCAAGCCGGTATTTTAGCAGG---------TGAAATC--ACAGA-TATTTTATTATTAGA 51944 Query 552305 TGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGA 552364 ||||||||| |||| |||||| | |||||||| || ||||||||||| || ||||| | Sbjct 51945 TGTTACTCCATTATCACTTGGTGTCGAAACAGTAGGTGGTATTATGACAAAACTTATTGC 52004 Query 552365 TAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCA 552424 | ||||||| || |||||| ||||||||| ||||||| || ||||||| || Sbjct 52005 TCGAAATACAACAATTCCTGTTAAAAAATCAGAATTATTTTCAACCGCAGCAGATAACCA 52064 Query 552425 AACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCA 552484 ||| ||| |||||| | || ||||||||||| || | || | ||||| Sbjct 52065 AACAAACGTTGAAATTCATGTATTACAAGGAGAAAGAGAAATTGTTAGTGGAAATAAGAG 52124 Query 552485 ACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGA 552544 || || | |||||| |||||||| |||||| ||||| || || |||||||| Sbjct 52125 TCTAGGAAATTTTAAATTAGAAGGAATTCCTGAAGCTCCAAAAGGTCGTCCACAAATTGA 52184 Query 552545 AGTTACTTTCGATAT 552559 ||| || || ||||| Sbjct 52185 AGTGACATTTGATAT 52199 Score = 120 bits (132), Expect = 2e-21 Identities = 127/167 (76%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||| || || | |||||||| |||||||||||||||||||||||||| |||||| Sbjct 51175 GGACAAGATGTGACTAAAGCAGTAATTACTGTACCAGCATATTTTAATGACTCTCAACGT 51234 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 || || || ||||| || |||||||| || | ||||| || ||||| |||||| Sbjct 51235 CAGGCAACAGTTGATGCAGGTAAAATTGCTGGTATTGAAGTTCTACGAATTATTAATGAA 51294 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGAT---AAACATAATGA 550545 || || || ||| || | || ||||| | ||| ||||| ||||| Sbjct 51295 CCAACAGCAGCTTCATTAGCTTATGGGTTAGATAAGAAACAAAATGA 51341 Score = 111 bits (122), Expect = 1e-18 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 ||||||||||||||||| ||||||||||| ||||| ||| | ||| | | || || Sbjct 51320 CCATAAGCTAATGAAGCTGCTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCA 51261 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 ||||| |||||| | || || |||||||| | |||||||||||||| || |||||| Sbjct 51260 ATTTTACCTGCATCAACTGTTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTA 51201 Query 361826 ATCACTGCTTT 361836 || |||||||| Sbjct 51200 ATTACTGCTTT 51190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026604601517080