Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq50892 518 9e-143 seq43102 518 9e-143 >seq50892 Length=141790 Score = 518 bits (574), Expect = 9e-143 Identities = 739/1032 (72%), Gaps = 6/1032 (1%) Strand=Plus/Minus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 |||||| | || || | ||| ||||||||||||| |||||| | || | || ||||| Sbjct 86540 TGGGAGCGCTTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTT 86481 Query 25853 GGGGTGCTTA-TGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCAT 25911 || || ||| || | || | ||| | |||| ||| | ||||| || | || || || Sbjct 86480 GGT-TGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTAT 86422 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 |||||| || || |||||||| ||||| || ||||| ||||| | || || ||| | || Sbjct 86421 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATA 86362 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 ||| ||||| || || ||||| ||||| |||| || ||||| || || | || || Sbjct 86361 CGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTT 86302 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||||| ||||||||||| | || | || |||||| ||||||| || || || || || Sbjct 86301 CTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCA 86242 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACT 26151 | | || | || ||||||||| |||| || ||| || || | | |||||| | Sbjct 86241 ATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATT 86182 Query 26152 ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGC 26211 | ||| | |||| ||| | || ||||| || || |||| | || ||| || | || Sbjct 86181 AAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGC 86122 Query 26212 AGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCC 26271 |||| ||||| |||||||| || || |||| ||||| ||| |||||| ||||| Sbjct 86121 AGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCC 86062 Query 26272 TCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACT 26331 | | ||||||||||||||||||||||| ||||| ||||||||||| ||||| || || | Sbjct 86061 TTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTT 86002 Query 26332 CATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGC 26391 |||||||||||||| ||||||||||||||||| || |||||||| || | ||| ||| Sbjct 86001 AATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGC 85942 Query 26392 TATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC-AGAAACGACAGAGGAAGTCTCAC 26450 ||||||||| || || |||| || ||| | | ||||| || || | | ||| Sbjct 85941 TATGCACGGTTCATTAGTAACTT-CTAGTTTAATCCGTGAAACAACTGAAAACGAATCAA 85883 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 || || || || || || || ||||| ||||| || || || || || |||||||||| Sbjct 85882 CTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 85823 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | |||||||| | ||||| || || || || || || ||| ||| || | || | Sbjct 85822 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACT 85763 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| | ||| ||||| ||| | || || ||| | || ||||||||||| | |||| Sbjct 85762 TCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAA 85703 Query 26631 TGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAATGGAAAG 26689 ||||||| ||| |||| ||||| ||||| ||||| || || || || | | || | | Sbjct 85702 TGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTG 85643 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 || || | |||||||||||| | | ||||| ||| | | || | ||||| |||||| Sbjct 85642 TTATTAAC-ACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 85584 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATCATCTGAGTCAACACAAGTTGCA 26809 || ||||| || || ||||| ||| | || ||||| ||| ||| | || |||||| Sbjct 85583 GAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGATGTATTACCAGTTGCT 85524 Query 26810 CTATCAGCCCCA 26821 | |||| ||| Sbjct 85523 TTCACAGCTCCA 85512 Score = 518 bits (574), Expect = 9e-143 Identities = 739/1032 (72%), Gaps = 6/1032 (1%) Strand=Plus/Plus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 |||||| | || || | ||| ||||||||||||| |||||| | || | || ||||| Sbjct 125549 TGGGAGCGCTTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTT 125608 Query 25853 GGGGTGCTTA-TGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCAT 25911 || || ||| || | || | ||| | |||| ||| | ||||| || | || || || Sbjct 125609 GGT-TGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTAT 125667 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 |||||| || || |||||||| ||||| || ||||| ||||| | || || ||| | || Sbjct 125668 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATA 125727 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 ||| ||||| || || ||||| ||||| |||| || ||||| || || | || || Sbjct 125728 CGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTT 125787 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||||| ||||||||||| | || | || |||||| ||||||| || || || || || Sbjct 125788 CTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCA 125847 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACT 26151 | | || | || ||||||||| |||| || ||| || || | | |||||| | Sbjct 125848 ATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATT 125907 Query 26152 ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGC 26211 | ||| | |||| ||| | || ||||| || || |||| | || ||| || | || Sbjct 125908 AAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGC 125967 Query 26212 AGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCC 26271 |||| ||||| |||||||| || || |||| ||||| ||| |||||| ||||| Sbjct 125968 AGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCC 126027 Query 26272 TCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACT 26331 | | ||||||||||||||||||||||| ||||| ||||||||||| ||||| || || | Sbjct 126028 TTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTT 126087 Query 26332 CATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGC 26391 |||||||||||||| ||||||||||||||||| || |||||||| || | ||| ||| Sbjct 126088 AATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGC 126147 Query 26392 TATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC-AGAAACGACAGAGGAAGTCTCAC 26450 ||||||||| || || |||| || ||| | | ||||| || || | | ||| Sbjct 126148 TATGCACGGTTCATTAGTAACTT-CTAGTTTAATCCGTGAAACAACTGAAAACGAATCAA 126206 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 || || || || || || || ||||| ||||| || || || || || |||||||||| Sbjct 126207 CTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 126266 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | |||||||| | ||||| || || || || || || ||| ||| || | || | Sbjct 126267 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACT 126326 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| | ||| ||||| ||| | || || ||| | || ||||||||||| | |||| Sbjct 126327 TCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAA 126386 Query 26631 TGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAATGGAAAG 26689 ||||||| ||| |||| ||||| ||||| ||||| || || || || | | || | | Sbjct 126387 TGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTG 126446 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 || || | |||||||||||| | | ||||| ||| | | || | ||||| |||||| Sbjct 126447 TTATTAAC-ACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 126505 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATCATCTGAGTCAACACAAGTTGCA 26809 || ||||| || || ||||| ||| | || ||||| ||| ||| | || |||||| Sbjct 126506 GAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGATGTATTACCAGTTGCT 126565 Query 26810 CTATCAGCCCCA 26821 | |||| ||| Sbjct 126566 TTCACAGCTCCA 126577 >seq43102 Length=56976 Score = 518 bits (574), Expect = 9e-143 Identities = 739/1032 (72%), Gaps = 6/1032 (1%) Strand=Plus/Minus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 |||||| | || || | ||| ||||||||||||| |||||| | || | || ||||| Sbjct 27251 TGGGAGCGCTTCTGCGCTTGGATTACAAGTACTGAAAACCGTTTATACATCGGTTGGTTT 27192 Query 25853 GGGGTGCTTA-TGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCAT 25911 || || ||| || | || | ||| | |||| ||| | ||||| || | || || || Sbjct 27191 GGT-TGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCATCGCTTTTAT 27133 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 |||||| || || |||||||| ||||| || ||||| ||||| | || || ||| | || Sbjct 27132 CGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTTCTTTATTATA 27073 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 ||| ||||| || || ||||| ||||| |||| || ||||| || || | || || Sbjct 27072 CGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTGGTATGCACTT 27013 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||||| ||||||||||| | || | || |||||| ||||||| || || || || || Sbjct 27012 CTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTGGTCCTTACCA 26953 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACT 26151 | | || | || ||||||||| |||| || ||| || || | | |||||| | Sbjct 26952 ATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTGAATGGGAATT 26893 Query 26152 ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGC 26211 | ||| | |||| ||| | || ||||| || || |||| | || ||| || | || Sbjct 26892 AAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTCCAGTAGCAGC 26833 Query 26212 AGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCC 26271 |||| ||||| |||||||| || || |||| ||||| ||| |||||| ||||| Sbjct 26832 AGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCC 26773 Query 26272 TCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACT 26331 | | ||||||||||||||||||||||| ||||| ||||||||||| ||||| || || | Sbjct 26772 TTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAACACAACATCTT 26713 Query 26332 CATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGC 26391 |||||||||||||| ||||||||||||||||| || |||||||| || | ||| ||| Sbjct 26712 AATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTTTATTCAGTGC 26653 Query 26392 TATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC-AGAAACGACAGAGGAAGTCTCAC 26450 ||||||||| || || |||| || ||| | | ||||| || || | | ||| Sbjct 26652 TATGCACGGTTCATTAGTAACTT-CTAGTTTAATCCGTGAAACAACTGAAAACGAATCAA 26594 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 || || || || || || || ||||| ||||| || || || || || |||||||||| Sbjct 26593 CTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCACACG 26534 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | |||||||| | ||||| || || || || || || ||| ||| || | || | Sbjct 26533 GTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTGCTTTACACT 26474 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| | ||| ||||| ||| | || || ||| | || ||||||||||| | |||| Sbjct 26473 TCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTATTAGTACAA 26414 Query 26631 TGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAATGGAAAG 26689 ||||||| ||| |||| ||||| ||||| ||||| || || || || | | || | | Sbjct 26413 TGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTCAAGGTCGTG 26354 Query 26690 ATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCAC 26749 || || | |||||||||||| | | ||||| ||| | | || | ||||| |||||| Sbjct 26353 TTATTAAC-ACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 26295 Query 26750 GAGCGTAATGCTCATAACTTTCCACTTGACTTAGCATCATCTGAGTCAACACAAGTTGCA 26809 || ||||| || || ||||| ||| | || ||||| ||| ||| | || |||||| Sbjct 26294 GAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGATGTATTACCAGTTGCT 26235 Query 26810 CTATCAGCCCCA 26821 | |||| ||| Sbjct 26234 TTCACAGCTCCA 26223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146637727000608