Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq50892 576 4e-160 seq43102 576 4e-160 >seq50892 Length=141790 Score = 576 bits (638), Expect = 4e-160 Identities = 722/986 (73%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| | |||||||||||| || || ||||||||||||||||||||||| | | Sbjct 85549 GCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 85608 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || ||| ||||| ||| || | | ||| ||| ||||| || || Sbjct 85609 GCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAACAGAT 85668 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || ||||| || || |||||||| || | | Sbjct 85669 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAAC 85728 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||| ||| | |||||| |||||| ||| ||||| || Sbjct 85729 CAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAT 85788 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| | | |||||||| || || || || || ||||| || ||| Sbjct 85789 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 85848 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTC--TGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| ||||| |||||||| || || ||||| ||| || | ||||||||||| Sbjct 85849 TCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTC--AGTTGTTTCAC 85906 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || | |||||| || | || ||||||||| ||| |||| |||||||||| Sbjct 85907 GGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATA 85966 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||||||||| || ||||| | ||| |||||||| || ||||||| Sbjct 85967 CACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATA 86026 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | ||||| ||||||||||||||||||||||| | ||||||||||||| |||| || | Sbjct 86027 CTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTT 86086 Query 5733 GTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTA 5792 | |||| ||||||||||| ||||||| | ||||| || || || || || |||||| Sbjct 86087 GACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTA 86146 Query 5793 CGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAG 5852 || | ||||| || ||||| ||||| | ||| || | |||||||| || |||| |||| Sbjct 86147 CGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAAC 86206 Query 5853 CTGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 ||| | ||| ||||| |||||| || |||| | |||||| || || || ||||| | | Sbjct 86207 TTGCAACACCTAATAA-GAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 86265 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || ||||| | |||||||||||||| || |||||||| | ||||| ||||| || Sbjct 86266 CACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAA 86325 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 || || | ||| || ||||| ||||||||||| || || | || ||| ||||| || ||| Sbjct 86326 CTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGT 86385 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || ||||| || ||||| || || || | || || | || || || | Sbjct 86386 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAA 86445 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 || || ||||| | | || | |||||| ||||||||| || | || | ||||| Sbjct 86446 GTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAACGGTTT 86505 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | || || |||| ||| | ||||| Sbjct 86506 TCAGTACTTGTAATCCAAGCGCAGAA 86531 Score = 576 bits (638), Expect = 4e-160 Identities = 722/986 (73%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| | |||||||||||| || || ||||||||||||||||||||||| | | Sbjct 126540 GCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 126481 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || ||| ||||| ||| || | | ||| ||| ||||| || || Sbjct 126480 GCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAACAGAT 126421 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || ||||| || || |||||||| || | | Sbjct 126420 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAAC 126361 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||| ||| | |||||| |||||| ||| ||||| || Sbjct 126360 CAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAT 126301 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| | | |||||||| || || || || || ||||| || ||| Sbjct 126300 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 126241 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTC--TGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| ||||| |||||||| || || ||||| ||| || | ||||||||||| Sbjct 126240 TCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTC--AGTTGTTTCAC 126183 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || | |||||| || | || ||||||||| ||| |||| |||||||||| Sbjct 126182 GGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATA 126123 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||||||||| || ||||| | ||| |||||||| || ||||||| Sbjct 126122 CACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATA 126063 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | ||||| ||||||||||||||||||||||| | ||||||||||||| |||| || | Sbjct 126062 CTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTT 126003 Query 5733 GTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTA 5792 | |||| ||||||||||| ||||||| | ||||| || || || || || |||||| Sbjct 126002 GACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTA 125943 Query 5793 CGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAG 5852 || | ||||| || ||||| ||||| | ||| || | |||||||| || |||| |||| Sbjct 125942 CGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAAC 125883 Query 5853 CTGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 ||| | ||| |||||| ||||| || |||| | |||||| || || || ||||| | | Sbjct 125882 TTGCAACACCTAATAAG-AAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 125824 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || ||||| | |||||||||||||| || |||||||| | ||||| ||||| || Sbjct 125823 CACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAA 125764 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 || || | ||| || ||||| ||||||||||| || || | || ||| ||||| || ||| Sbjct 125763 CTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGT 125704 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || ||||| || ||||| || || || | || || | || || || | Sbjct 125703 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAA 125644 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 || || ||||| | | || | |||||| ||||||||| || | || | ||||| Sbjct 125643 GTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAACGGTTT 125584 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | || || |||| ||| | ||||| Sbjct 125583 TCAGTACTTGTAATCCAAGCGCAGAA 125558 >seq43102 Length=56976 Score = 576 bits (638), Expect = 4e-160 Identities = 722/986 (73%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| | |||||||||||| || || ||||||||||||||||||||||| | | Sbjct 26260 GCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 26319 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||||||| | || ||| ||||| ||| || | | ||| ||| ||||| || || Sbjct 26320 GCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAACAGAT 26379 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || |||||||| || ||||| | || || ||||| || || |||||||| || | | Sbjct 26380 TGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAAC 26439 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | | || ||||| ||| | |||||| |||||| ||| ||||| || Sbjct 26440 CAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAT 26499 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 ||| || |||||||| | | |||||||| || || || || || ||||| || ||| Sbjct 26500 GAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 26559 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTC--TGAGAAGTAAGCCCAGTTGTTTCAC 5552 ||||| ||||| |||||||| || || ||||| ||| || | ||||||||||| Sbjct 26560 TCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTC--AGTTGTTTCAC 26617 Query 5553 GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATA 5612 | || | |||||| || | || ||||||||| ||| |||| |||||||||| Sbjct 26618 GGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATA 26677 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||||||||| ||||||||| || ||||| | ||| |||||||| || ||||||| Sbjct 26678 CACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATA 26737 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | ||||| ||||||||||||||||||||||| | ||||||||||||| |||| || | Sbjct 26738 CTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTT 26797 Query 5733 GTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTA 5792 | |||| ||||||||||| ||||||| | ||||| || || || || || |||||| Sbjct 26798 GACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTA 26857 Query 5793 CGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAG 5852 || | ||||| || ||||| ||||| | ||| || | |||||||| || |||| |||| Sbjct 26858 CGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAAC 26917 Query 5853 CTGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGC 5911 ||| | ||| ||||| |||||| || |||| | |||||| || || || ||||| | | Sbjct 26918 TTGCAACACCTAATAA-GAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAAC 26976 Query 5912 CATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAG 5971 || ||||| | |||||||||||||| || |||||||| | ||||| ||||| || Sbjct 26977 CACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAA 27036 Query 5972 CTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGT 6031 || || | ||| || ||||| ||||||||||| || || | || ||| ||||| || ||| Sbjct 27037 CTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGT 27096 Query 6032 TCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTA 6091 ||||| || || ||||| || ||||| || || || | || || | || || || | Sbjct 27097 TCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAA 27156 Query 6092 GTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTG 6151 || || ||||| | | || | |||||| ||||||||| || | || | ||||| Sbjct 27157 GTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAACGGTTT 27216 Query 6152 TTGGTGCTAGTAACCCAGTCACAGAA 6177 | || || |||| ||| | ||||| Sbjct 27217 TCAGTACTTGTAATCCAAGCGCAGAA 27242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152557347359112