Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq50892 513 4e-141 seq43102 513 4e-141 >seq50892 Length=141790 Score = 513 bits (568), Expect = 4e-141 Identities = 717/1004 (71%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| | || ||||| || | ||||||||||| |||||||| || ||||| |||||||| Sbjct 85540 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 85599 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 ||||| || |||||||||| || |||||||| || | || | || | |||||| Sbjct 85600 CCTAAATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCA 85659 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || |||||||| || ||||| | || || ||||| || | |||||| Sbjct 85660 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATA 85719 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 | || | ||| || | || ||||| ||| | |||||| |||||| ||| Sbjct 85720 GAAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG 85779 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || ||| || |||||||| | | |||||||| || || || || || ||| Sbjct 85780 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 85839 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 85840 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTT 85899 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||||||| || | ||||| || | |||||||||||| |||||||| ||| Sbjct 85900 GTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCA 85959 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 |||||||| || |||||||| ||| ||||| || ||||| | ||| |||||||| || Sbjct 85960 CCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCT 86019 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || || ||||| || || ||||| || || ||||| | ||||||||||||||||||| Sbjct 86020 TGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 86079 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 ||||| || | ||||| ||||||||||| ||| | |||||||| || || || || Sbjct 86080 GAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 86139 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 | ||||| | ||||| || | ||| |||| | || || | |||||||| || ||| Sbjct 86140 AATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCC 86199 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | |||| || | || | | ||||| || || || | ||| || || |||||||| Sbjct 86200 ATGTAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTG 86259 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || |||||||| || | | || ||||||||||||||||||||||| | ||| || ||| Sbjct 86260 TATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCG 86319 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 || || |||| | ||| ||||||||||||||||| || || | ||| | |||| Sbjct 86320 TTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCT 86379 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAA 26340 || || ||||| |||||||| ||||| || ||||| || || | ||| || || ||| Sbjct 86380 ACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAA 86439 Query 26341 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 26400 | | || |||||||| | | ||| | ||||| |||||||| || | || Sbjct 86440 CAAGAAGT---AGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTAT 86496 Query 26401 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | ||||| | |||||||||| ||| | || || | ||||| Sbjct 86497 AAACGGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 86540 Score = 513 bits (568), Expect = 4e-141 Identities = 717/1004 (71%), Gaps = 6/1004 (1%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| | || ||||| || | ||||||||||| |||||||| || ||||| |||||||| Sbjct 126549 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 126490 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 ||||| || |||||||||| || |||||||| || | || | || | |||||| Sbjct 126489 CCTAAATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCA 126430 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || |||||||| || ||||| | || || ||||| || | |||||| Sbjct 126429 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATA 126370 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 | || | ||| || | || ||||| ||| | |||||| |||||| ||| Sbjct 126369 GAAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG 126310 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || ||| || |||||||| | | |||||||| || || || || || ||| Sbjct 126309 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 126250 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 126249 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTT 126190 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||||||| || | ||||| || | |||||||||||| |||||||| ||| Sbjct 126189 GTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCA 126130 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 |||||||| || |||||||| ||| ||||| || ||||| | ||| |||||||| || Sbjct 126129 CCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCT 126070 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || || ||||| || || ||||| || || ||||| | ||||||||||||||||||| Sbjct 126069 TGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 126010 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 ||||| || | ||||| ||||||||||| ||| | |||||||| || || || || Sbjct 126009 GAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 125950 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 | ||||| | ||||| || | ||| |||| | || || | |||||||| || ||| Sbjct 125949 AATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCC 125890 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | |||| || | || | | ||||| || || || | ||| || || |||||||| Sbjct 125889 ATGTAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTG 125830 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || |||||||| || | | || ||||||||||||||||||||||| | ||| || ||| Sbjct 125829 TATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCG 125770 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 || || |||| | ||| ||||||||||||||||| || || | ||| | |||| Sbjct 125769 TTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCT 125710 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAA 26340 || || ||||| |||||||| ||||| || ||||| || || | ||| || || ||| Sbjct 125709 ACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAA 125650 Query 26341 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 26400 | | || |||||||| | | ||| | ||||| |||||||| || | || Sbjct 125649 CAAGAAGT---AGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTAT 125593 Query 26401 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | ||||| | |||||||||| ||| | || || | ||||| Sbjct 125592 AAACGGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 125549 >seq43102 Length=56976 Score = 513 bits (568), Expect = 4e-141 Identities = 717/1004 (71%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| | || ||||| || | ||||||||||| |||||||| || ||||| |||||||| Sbjct 26251 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 26310 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 ||||| || |||||||||| || |||||||| || | || | || | |||||| Sbjct 26311 CCTAAATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCA 26370 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || |||||||| || ||||| | || || ||||| || | |||||| Sbjct 26371 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATA 26430 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 | || | ||| || | || ||||| ||| | |||||| |||||| ||| Sbjct 26431 GAAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG 26490 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || ||| || |||||||| | | |||||||| || || || || || ||| Sbjct 26491 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 26550 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 26551 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTT 26610 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||||||| || | ||||| || | |||||||||||| |||||||| ||| Sbjct 26611 GTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCA 26670 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 |||||||| || |||||||| ||| ||||| || ||||| | ||| |||||||| || Sbjct 26671 CCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCT 26730 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || || ||||| || || ||||| || || ||||| | ||||||||||||||||||| Sbjct 26731 TGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 26790 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 ||||| || | ||||| ||||||||||| ||| | |||||||| || || || || Sbjct 26791 GAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 26850 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 | ||||| | ||||| || | ||| |||| | || || | |||||||| || ||| Sbjct 26851 AATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCC 26910 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | |||| || | || | | ||||| || || || | ||| || || |||||||| Sbjct 26911 ATGTAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTG 26970 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || |||||||| || | | || ||||||||||||||||||||||| | ||| || ||| Sbjct 26971 TATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCG 27030 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 || || |||| | ||| ||||||||||||||||| || || | ||| | |||| Sbjct 27031 TTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCT 27090 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAA 26340 || || ||||| |||||||| ||||| || ||||| || || | ||| || || ||| Sbjct 27091 ACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAA 27150 Query 26341 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 26400 | | || |||||||| | | ||| | ||||| |||||||| || | || Sbjct 27151 CAAGAAGT---AGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTAT 27207 Query 26401 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | ||||| | |||||||||| ||| | || || | ||||| Sbjct 27208 AAACGGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 27251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151901743807792