Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4331 241 1e-58 seq44130 82.4 6e-11 >seq4331 Length=8668 Score = 241 bits (266), Expect = 1e-58 Identities = 292/398 (73%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 29986 CTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045 || ||||| |||||||| | |||||||||| || || ||||| | ||| ||| | Sbjct 6749 CTTACGTAGAACTGACAGAACATGTGGCACGGGGGCAGCGCCATCTTGTCCAGGTCGGCG 6808 Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 |||||||| || ||| || ||| | | || || |||||||||||||| ||| | | Sbjct 6809 GGGTTCCAAGCCGACATGACGATCCTGCGATCCTCCGGGTTGTTCCTGATCTTGTCGATG 6868 Query 30106 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30165 || |||||| ||||||||| ||||| |||||| || | ||||||| |||||| Sbjct 6869 CAGTCGGCCAGCTGGTCCACCCCCTTCCCCTTGTAGTCGGCGCGCATGTCCTCGTACTCC 6928 Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225 || ||||| |||||||||||||||||||||||||| || ||||| ||||| || | |||| Sbjct 6929 GCCCCGAAGTGCCTCCACTGGAACCCGTACACCGGCCCGAGGTCGCCCTCCTCGCGGTGC 6988 Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285 | ||||| | ||| | || || | || ||||| ||||||| || | || | Sbjct 6989 GACAGGCCCCGCGAGTCGAGGAACTCGCGCGAGCCGTTCCCGTCCCATATGTGTATGTTC 7048 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30345 || |||| |||||| || | ||| ||||| || ||||||||| || |||||||| | Sbjct 7049 TTGTCGGCGAGCTCGTTCGCGTTCGTGGAGCCCGAGACGAACCAGAGGAGCTCCTCGGCC 7108 Query 30346 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||| || |||| || | ||| |||||||||||||| Sbjct 7109 ACGCCCCTCCAGAACGTGCGCTTCGTCGTGAGGAGGGG 7146 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811 || ||| |||| |||| || | | |||| | ||| ||||| ||||| | ||| Sbjct 6308 TTCATCTTCAGCCTGGGGAATGCCCGAGGCTTTCGCTCCAGCTGTTCCTTCAATGCGTCC 6367 Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 || || | |||||| || || |||||||| | ||||||||||| |||||||| | || Sbjct 6368 ACATGGTTCAGGTAAACATGGGCGTCTCCAATCGTGTGGACAAAGTCTCCCGGCTTGCGC 6427 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 |||||||| | |||| ||||| || ||||| | ||| || ||||| || || || Sbjct 6428 CCGGTGACCTTGGCCACCATGTGAGTCAGGAGGGCGTAAGATGCTATGTTGAAAGGAACG 6487 Query 29932 CCGAGCCCCATGTC 29945 |||||||||||||| Sbjct 6488 CCGAGCCCCATGTC 6501 >seq44130 Length=14407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 52113 CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52171 |||||||||||||||||| || | || || | ||||||||| ||||| |||||||||| Sbjct 10106 CAGGAGGACATGCCCTTC-ACGTGCGAGGGCATCGTGCCCGACATCATCGTCAACCCCCA 10048 Query 52172 CGCCTTTCCATCCAGGATGACC 52193 |||| | |||||| |||||||| Sbjct 10047 CGCCATCCCATCCCGGATGACC 10026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408364156465916