Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq18597 87.8 1e-12 seq18371 84.2 2e-11 seq10981 84.2 2e-11 seq9453 84.2 2e-11 seq33104 82.4 6e-11 >seq18597 Length=5183 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || || | || Sbjct 2859 AGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 2918 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||||||||| | ||| | ||||||| Sbjct 2919 CCATCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCC 2978 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || |||| ||| || || | || Sbjct 2979 TTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTG 3038 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||| || || ||||| |||||||| Sbjct 3039 ATCGTCTTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || || | || Sbjct 3087 AGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 3146 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||||||||| | ||| | |||||| Sbjct 3147 CCGTCCTCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCC 3206 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || |||| ||| || || | || Sbjct 3207 TTGTCCTGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTG 3266 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCA 48765 ||||| || || |||| || || || |||||||||| Sbjct 3267 ATCGTCTTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq18371 Length=23815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || ||||| |||||||| ||||| || || ||||| |||||||| ||| Sbjct 23802 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 23743 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | || || ||||| || ||||||| ||||||||||| || Sbjct 23742 AAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAGATCAGTCTCTGTTGATCCGGCGGG 23683 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 23682 ATCCCCTCCTTGTC 23669 >seq10981 Length=11828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || ||||| |||||||| ||||| || || ||||| |||||||| ||| Sbjct 2402 CCGCCACGAAGACGCAAGACCAAATGGAGCGTCGATTCCTTCTGAATGTTGTAATCCGAT 2343 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | ||||| ||||| || ||||||| ||||||||| | || Sbjct 2342 AAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAGTCTCTGTTGATCTGGCGGG 2283 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 2282 ATCCCCTCCTTGTC 2269 >seq9453 Length=4450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | ||||| | || | || ||||| ||| || || || ||||| || | Sbjct 1124 CGCCGCCGCGGAGCCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1065 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| || | |||||| || || || ||||| ||||||||||||| || Sbjct 1064 AGAGGGTCCGTCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGG 1005 Query 48658 GAACGCCCTCCTTGTC 48673 | | |||||||||||| Sbjct 1004 GGATGCCCTCCTTGTC 989 >seq33104 Length=5523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| || ||||| ||| || || ||||| |||||||| || | || Sbjct 3248 AGACGCAAGACCAGGTGGAGCGTCGACTCCTTCTGGATATTATAATCAGAAAGTGTACGG 3189 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| |||| | ||||||||||| |||| ||| ||| Sbjct 3188 CCATCCTCCAGCTGCTTTCCCGCAAAAATCAACCTCTGTTGATCCGGTGGAATGCCTTCC 3129 Query 48669 TTGTC 48673 || || Sbjct 3128 TTATC 3124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380701324882116