Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq50892 737 0.0 seq43102 737 0.0 >seq50892 Length=141790 Score = 737 bits (816), Expect = 0.0 Identities = 725/935 (78%), Gaps = 6/935 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||| ||| || ||| | |||| || | |||| | |||| ||||||| Sbjct 86491 TCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCA 86432 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || || || ||||| |||||||| ||||||||||||||| | ||||| || ||||||| Sbjct 86431 TCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTT 86372 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | | || ||||||||||||||||| ||||| || | ||||||||||| ||||||| Sbjct 86371 CTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTG 86312 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | |||||||| || |||||||||||||| | ||||||||||||| || || |||| Sbjct 86311 GTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTG 86252 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | | || || |||||| | | || | || ||| |||||| Sbjct 86251 GTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTG 86192 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | |||||| | ||||| |||||||||||||||||||||| || |||| |||||| | Sbjct 86191 AATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTC 86132 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| | ||||| | || || ||||| || || || ||||||||||||||||||||| Sbjct 86131 CAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTG 86072 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||| |||||||||||||||| |||||| || |||||||| || | Sbjct 86071 ATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAAC 86012 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||| |||||||||| ||||| ||| ||| || || ||||||||||||||||| Sbjct 86011 ACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTT 85952 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||||||||| | || |||||| | | ||| | ||||| ||||| Sbjct 85951 TATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAA 85892 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||| ||||||||||| || ||||| ||||||||||| ||||||||||| || | Sbjct 85891 ACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAG 85832 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||| || || ||||||||||| || |||||||| || || || ||||||||||||||| Sbjct 85831 CTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTG 85772 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||| | ||| || || || | | |||||||| ||| | |||||| Sbjct 85771 CTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTA 85712 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC-- 163376 | || |||||||||||| | ||||||||||||||||||||||| || ||||| | Sbjct 85711 TTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTC 85652 Query 163377 -AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || || ||| || ||||| |||||| ||||| | || | | ||||||| Sbjct 85651 AAGGTCGT---GTTATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGG 85595 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCA 163470 |||| |||||||| ||||| || |||||||||||| Sbjct 85594 AAGTAATGCACGAACGTAACGCGCACAACTTCCCA 85560 Score = 737 bits (816), Expect = 0.0 Identities = 725/935 (78%), Gaps = 6/935 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||| ||| || ||| | |||| || | |||| | |||| ||||||| Sbjct 125598 TCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCA 125657 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || || || ||||| |||||||| ||||||||||||||| | ||||| || ||||||| Sbjct 125658 TCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTT 125717 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | | || ||||||||||||||||| ||||| || | ||||||||||| ||||||| Sbjct 125718 CTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTG 125777 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | |||||||| || |||||||||||||| | ||||||||||||| || || |||| Sbjct 125778 GTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTG 125837 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | | || || |||||| | | || | || ||| |||||| Sbjct 125838 GTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTG 125897 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | |||||| | ||||| |||||||||||||||||||||| || |||| |||||| | Sbjct 125898 AATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTC 125957 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| | ||||| | || || ||||| || || || ||||||||||||||||||||| Sbjct 125958 CAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTG 126017 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||| |||||||||||||||| |||||| || |||||||| || | Sbjct 126018 ATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAAC 126077 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||| |||||||||| ||||| ||| ||| || || ||||||||||||||||| Sbjct 126078 ACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTT 126137 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||||||||| | || |||||| | | ||| | ||||| ||||| Sbjct 126138 TATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAA 126197 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||| ||||||||||| || ||||| ||||||||||| ||||||||||| || | Sbjct 126198 ACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAG 126257 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||| || || ||||||||||| || |||||||| || || || ||||||||||||||| Sbjct 126258 CTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTG 126317 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||| | ||| || || || | | |||||||| ||| | |||||| Sbjct 126318 CTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTA 126377 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC-- 163376 | || |||||||||||| | ||||||||||||||||||||||| || ||||| | Sbjct 126378 TTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTC 126437 Query 163377 -AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || || ||| || ||||| |||||| ||||| | || | | ||||||| Sbjct 126438 AAGGTCGT---GTTATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGG 126494 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCA 163470 |||| |||||||| ||||| || |||||||||||| Sbjct 126495 AAGTAATGCACGAACGTAACGCGCACAACTTCCCA 126529 >seq43102 Length=56976 Score = 737 bits (816), Expect = 0.0 Identities = 725/935 (78%), Gaps = 6/935 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||| ||| || ||| | |||| || | |||| | |||| ||||||| Sbjct 27202 TCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAGCTACTTCTTGTTTCATCA 27143 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || || || ||||| |||||||| ||||||||||||||| | ||||| || ||||||| Sbjct 27142 TCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCCGTGAACCAGTAGCAGGTT 27083 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | | || ||||||||||||||||| ||||| || | ||||||||||| ||||||| Sbjct 27082 CTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCCCTAGTTCAAACGCTATTG 27023 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | |||||||| || |||||||||||||| | ||||||||||||| || || |||| Sbjct 27022 GTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATGAGTGGTTATACAACGGTG 26963 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||| | | || || |||||| | | || | || ||| |||||| Sbjct 26962 GTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTGCAAGTTACATGGGTCGTG 26903 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | |||||| | ||||| |||||||||||||||||||||| || |||| |||||| | Sbjct 26902 AATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCATTCTCTGCTC 26843 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| | ||||| | || || ||||| || || || ||||||||||||||||||||| Sbjct 26842 CAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCGGTCAAGGTTCTTTCTCTG 26783 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||| |||||||||||||||| |||||| || |||||||| || | Sbjct 26782 ATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGTTAGTATTCCAAGCTGAAC 26723 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||| |||||||||| ||||| ||| ||| || || ||||||||||||||||| Sbjct 26722 ACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTCGGTGGTTCTT 26663 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||||||||| | || |||||| | | ||| | ||||| ||||| Sbjct 26662 TATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAATCCGTGAAACAACTGAAA 26603 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||| ||||||||||| || ||||| ||||||||||| ||||||||||| || | Sbjct 26602 ACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTAG 26543 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||| || || ||||||||||| || |||||||| || || || ||||||||||||||| Sbjct 26542 CTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCACGTG 26483 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||| | ||| || || || | | |||||||| ||| | |||||| Sbjct 26482 CTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTTCTATGGGTA 26423 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC-- 163376 | || |||||||||||| | ||||||||||||||||||||||| || ||||| | Sbjct 26422 TTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGATTCTC 26363 Query 163377 -AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || || ||| || ||||| |||||| ||||| | || | | ||||||| Sbjct 26362 AAGGTCGT---GTTATTAACACATGGGCTGATATCATTAACCGTGCTGATTTAGGTATGG 26306 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCA 163470 |||| |||||||| ||||| || |||||||||||| Sbjct 26305 AAGTAATGCACGAACGTAACGCGCACAACTTCCCA 26271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552732955104480