Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_019485.1 Length=59080 Score E Sequences producing significant alignments: (Bits) Value seq50892 93.3 2e-14 seq43102 93.3 2e-14 seq19801 93.3 2e-14 >seq50892 Length=141790 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 55547 CGGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAG 55606 |||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| Sbjct 70460 CGGGATATAGCTCAGTTTGGTAGAGTACCTGCTTTGGGAGCAGGGTGCCGTAGGTTCAAA 70401 Query 55607 TCCAGCTATCCCGA 55620 ||| ||||||||| Sbjct 70400 TCCTACTATCCCGA 70387 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 55547 CGGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAG 55606 |||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| Sbjct 141629 CGGGATATAGCTCAGTTTGGTAGAGTACCTGCTTTGGGAGCAGGGTGCCGTAGGTTCAAA 141688 Query 55607 TCCAGCTATCCCGA 55620 ||| ||||||||| Sbjct 141689 TCCTACTATCCCGA 141702 >seq43102 Length=56976 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 55547 CGGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAG 55606 |||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| Sbjct 11171 CGGGATATAGCTCAGTTTGGTAGAGTACCTGCTTTGGGAGCAGGGTGCCGTAGGTTCAAA 11112 Query 55607 TCCAGCTATCCCGA 55620 ||| ||||||||| Sbjct 11111 TCCTACTATCCCGA 11098 >seq19801 Length=7507 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 55547 CGGGATATAGCTCAGTTTGGTAGAGTGTCTGCTTTGGGAGCAGAATGTCGTTGGTTCAAG 55606 |||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||| Sbjct 236 CGGGATATAGCTCAGTTTGGTAGAGTACCTGCTTTGGGAGCAGGGTGCCGTAGGTTCAAA 295 Query 55607 TCCAGCTATCCCGA 55620 ||| ||||||||| Sbjct 296 TCCTACTATCCCGA 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188820218912368