Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq48315 268 2e-66 seq45459 183 6e-41 seq24354 172 1e-37 seq4998 159 6e-34 >seq48315 Length=10477 Score = 268 bits (296), Expect = 2e-66 Identities = 488/705 (69%), Gaps = 21/705 (3%) Strand=Plus/Minus Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCC--G 213768 |||||||||| ||||||||| | ||||| ||| ||||||| | |||| || ||| | Sbjct 2366 GCCTCGTACTTCTCGTAGAGCGCCTTGAACTCGGCGCCCCAGCACGTGTCGAGCCCCTTG 2307 Query 213769 GACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAAC 213827 || | | |||| |||||||| |||||||||||| | ||| ||| |||| ||||||| Sbjct 2306 CACTCGTT-CGGG-CACATGAGCGTCCAGTCCCCGTTCGTCTG-GACCCTCTCCATGAAC 2250 Query 213828 AGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCC---TCTCGTCCACTCCA 213884 |||||||||| ||| |||||| |||||||||||| | |||| |||||| | || Sbjct 2249 AGGTCCGGGATCCAGAGCGCGTAGAACAGGTCCCTCGCCCTCTCCATCTCGTTC---CCG 2193 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| || | || || || ||| | ||||||||||||||||||||||| ||||| Sbjct 2192 TGGTTCTTCCTAAGGTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGCTCGATGTACGCC 2133 Query 213945 GCAAAGGCGCCCGGCCTCTTGCCGCCC---TGGTCCACCAGCCTGGCCACCATGTTGAAG 214001 || | | ||| |||||| |||||| ||||| || || ||| |||||||| Sbjct 2132 GCGATCGATCCCTTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGTTGAAG 2073 Query 214002 ATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCG 214061 | ||| || | ||| || | ||||||||| ||||| || ||| || ||||| || Sbjct 2072 ACGCGGAGCATGGGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGGATGTACGACGCG 2013 Query 214062 GAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCG 214121 || || | | ||| ||||| || || || || || ||||||||| ||| | ||| Sbjct 2012 GACGCGCGGACGTTCGAGATGGACAGGCCGATCCCCCCCGCGTACTTGCTGATGACCGCG 1953 Query 214122 CAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAG 214181 ||| | | | || || |||||| | ||| ||| || ||| | | || |||| Sbjct 1952 CAGTTCTTGAGCGTGTCGTATATGCCGTCGATGGAGTCCTCCCTGACGCACGTCAGGAAG 1893 Query 214182 CAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATC 214241 |||||||| | ||| || ||| || || | |||||| |||||||| |||| ||| | Sbjct 1892 CAGCTCGACATCTGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTGGCGTGGGTG 1833 Query 214242 ATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGG 214301 | ||| | |||||| |||| ||||| ||||| ||||||| | |||| Sbjct 1832 AAGAACCGCTGGCTGAGGAGGTTGTACGTCTCGAGGACCCTCTCGATGTCGCCCATGTGT 1773 Query 214302 ATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGG 214358 ||| | ||| | ||| || | ||||||||| | || | || | || | | Sbjct 1772 ATCCCGACCGCGACGCGCATGAGGAGGTGCTGGGGACGCTCGGCGATCTGGCC---GTGC 1716 Query 214359 CCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 ||||||||||||||| ||| || |||||||| || |||||| Sbjct 1715 ATCTTGAGCAGGTAGGACTTCTCGAGGGTCTTGAAGCCGAAGTAG 1671 Score = 152 bits (168), Expect = 1e-31 Identities = 291/425 (68%), Gaps = 28/425 (7%) Strand=Plus/Minus Query 213280 GCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGT 213339 || ||||||| |||||| | || ||||| ||||| |||||||| |||||||| | || Sbjct 2907 GCTTCATCATC---TGGAACGCGTCCGCCAGTCCCTGCACCCCGATCCCGATGGGACGGT 2851 Query 213340 GTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGT 213399 | || ||| | | |||||| | |||||| |||||| |||||||| | ||| Sbjct 2850 GCCTGGTGTTGCTCCTCCTCGCCTCCTCGACGGGGTAGAAGTTGTTGTCGATGACCCTGT 2791 Query 213400 TGAGGTTGCGGGTGGCCACTTTGGTGA----CATGGGCCAGGTACTCGTGATTGAA---C 213452 | ||||| || |||| || | || |||| || | ||| | | ||| | Sbjct 2790 TCAGGTTCTTCGTCACCACCTTCGAGATGTACATGAGCTGG----TCGAGGTCGAAGCTC 2735 Query 213453 ACGTAGCCCCCGTCCT---------GC---ACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 ||| |||||| | || || |||| | |||| |||| |||||| Sbjct 2734 GCGTCCCCCCCGAACCCGTCGGCGGGCGTGACGAACTTGGAGAGGGAGATGGACGCCAGG 2675 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||||||||| | ||| | | | |||||||| | ||||||||||| |||||| | Sbjct 2674 TTGCAAACGGCGATCTCGTCGGGGCACGTGTACTCGACAATCTCGGTGCAGAGGTTGGAG 2615 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAG 213619 || ||| ||||| |||||||| ||||| ||||| ||||| ||| ||||||||||| Sbjct 2614 CACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCCGTTG-CAGTGGTCCTTGTAGAG 2556 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 ||||||||| | |||||||| | |||||| | || || | |||||| | | ||| Sbjct 2555 CATGTAGGGCGTGCCGGTCTCGACCTGGGAGTCGAGGATGGCGAACCAGAGCTGCTGGGC 2496 Query 213680 CTTGA 213684 ||||| Sbjct 2495 CTTGA 2491 >seq45459 Length=4245 Score = 183 bits (202), Expect = 6e-41 Identities = 380/559 (68%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | ||||| |||||||| ||| || ||| |||| ||||| |||||| Sbjct 3270 CAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGA 3211 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| ||| | || ||||||||||| || || ||| || || |||||| Sbjct 3210 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAA 3151 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT-TCTTGTCTGA 48309 |||||||| || || ||||| ||| || || ||| ||||||| || | || | | Sbjct 3150 ATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAGT-C 3092 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC--- 48366 | ||| ||| ||||| | ||||| |||| | ||| |||| ||||| ||||| Sbjct 3091 GCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTT 3032 Query 48367 CCGGAAGAGCTTCTTGCACTC-ACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 ||| | || ||||| || |||| |||| || || || || |||| | | Sbjct 3031 GAGGAGGTGCATCTTG---TCGGCCTG-GTCCTTAATGTATGTGTCGATCAGCAACGAAT 2976 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | ||||| ||| | || || | || || || || |||||||| ||||||||| Sbjct 2975 AGGTCTCACTGTGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 2916 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 || || || |||| ||| || | || ||||| |||||||| || || || | Sbjct 2915 CGGATTGAACCTCGGTGGCGAAGTTCCCACATAGGTTCTCGTTGACTATACCGTCAGACG 2856 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 |||| |||||||| |||| || | ||||| | ||||||| || | | | || Sbjct 2855 CAGCGAAGAAGGCGAGGATGTGGGAGACAAAATGCCTTTCGTTGTTCGTCAAGCCGTCCC 2796 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| || ||| | | |||| || | || || | |||||||| || || ||| | Sbjct 2795 AGTCCTTTAAGTCCTCGGCCAGATCAATCTCCTCGGCCGTCCAGAATGATGCCTCTGCCT 2736 Query 48666 TTTTGTACATGCCCCATAT 48684 | |||||||| |||||| Sbjct 2735 TCTTGTACATTTGCCATAT 2717 >seq24354 Length=8886 Score = 172 bits (190), Expect = 1e-37 Identities = 333/486 (69%), Gaps = 9/486 (2%) Strand=Plus/Minus Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGT 213547 |||||| || |||||||||||||||||||||| || |||||||| |||||||| || Sbjct 7245 GATGCTAGCAAGGTTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGT 7186 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607 ||| || ||||||| | || ||||| ||||| || || || ||| |||| |||| Sbjct 7185 GCATAGATTGCTGCTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCAGC 7126 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--C 213665 ||||| || || | ||| ||| || ||||||| || | | ||||| ||| | Sbjct 7125 GTCCTTATAAAGGAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGAGTAT--GGCCGCC 7068 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCG 213725 ||||| | || || | | ||| || ||| || ||| |||| ||| Sbjct 7067 CAGAGCTGCCGCGCTCGTATCTGGCGCTTGTGCCGTCCCTCCGA---CTCATACTTCTCG 7011 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGA-TGCGGGACA 213784 ||||||| | || | | ||| | | | | || || ||||| || ||| || Sbjct 7010 TAGAGCTTCTCAAACTGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGG-CA 6952 Query 213785 CATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAG 213844 ||| |||||||| | ||||| || ||| | | |||||| ||||| |||||||| | Sbjct 6951 CATCAGGCTCCAAACTCCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAA 6892 Query 213845 CGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAG 213904 | || |||||| | ||| | | | ||| ||| |||| |||||| || || | || Sbjct 6891 CCCGTAGAACAGATTCCTTGCGCGCTGCTCCTCCTTTCCATGGTTTTTTCGGAGGTTGAG 6832 Query 213905 AAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT 213964 | ||| || ||||| |||||||||||||| | ||| ||||| |||||||| || | ||| Sbjct 6831 CACGTCGAAAATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTT 6772 Query 213965 GCCGCC 213970 ||||| Sbjct 6771 CCCGCC 6766 >seq4998 Length=959 Score = 159 bits (176), Expect = 6e-34 Identities = 302/438 (69%), Gaps = 10/438 (2%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | ||||| |||||||| ||| || ||| |||| ||||| |||||| Sbjct 455 CAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGGGAAATAAGCTCGTTTGAGAAACAGAGA 514 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| ||| | || ||||||||||| || || ||| || || |||||| Sbjct 515 CCAGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCGCTGAAGAAA 574 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT-TCTTGTCTGA 48309 |||||||| || || ||||| ||| || || ||| ||||||| || | || | | Sbjct 575 ATGCCCTCGACGGCGGCGAAGGCGATGCACCGCTCCGCGAAAGAGGCATGTCGCGAGT-C 633 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC--- 48366 | ||| ||| ||||| | ||||| |||| | ||| |||| ||||| ||||| Sbjct 634 GCACCACTTAAGGGCCCAATTCGCCTTTTTCTGAACGCACGGCACGGTCTCGATGGCGTT 693 Query 48367 CCGGAAGAGCTTCTTGCACTC-ACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 ||| | || ||||| || |||| |||| || || || || |||| | | Sbjct 694 GAGGAGGTGCATCTTG---TCGGCCTG-GTCCTTAATGTATGTGTCGATCAGCAACGAAT 749 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | ||||| ||| | || || | || || || || |||||||| ||||||||| Sbjct 750 AGGTCTCACTGTGAATGTTTTCAACGGCAATTTGAAATCCGTAGAAACACCTGGCCTCGG 809 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 || || || |||| ||| || | || ||||| |||||||| || || || | Sbjct 810 CGGATTGAACCTCGGTGGCGAAGTTCCCACATAGGTTCTCGTTGACTATACCGTCAGACG 869 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| |||||||| |||| Sbjct 870 CAGCGAAGAAGGCGAGGA 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930940205409280