Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq45459 210 4e-49 seq48315 197 3e-45 seq24354 179 7e-40 seq4998 172 1e-37 seq2764 109 1e-18 >seq45459 Length=4245 Score = 210 bits (232), Expect = 4e-49 Identities = 396/573 (69%), Gaps = 12/573 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| | ||| |||||| ||||| |||||||||||| Sbjct 2717 ATATGGCAAATGTACAAGAAGGCAGAGGCATCATTCTGGACGGCCGAGGAGATTGATCTG 2776 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| ||||| | | | |||| ||| | | || |||| ||||||| || || Sbjct 2777 GCCGAGGACTTAAAGGACTGGGACGGCTTGACGAACAACGAAAGGCATTTTGTCTCCCAC 2836 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 | | || ||||| || || ||||| |||||||| |||||||| || || | || ||| Sbjct 2837 ATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTATGTGGGAACTTC 2896 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 ||| || || || | || ||||||| |||||||||||| || || || ||| | ||| Sbjct 2897 GCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAATTGCCGTTGAA 2956 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCC 25773 || | ||| |||| ||| | | | ||||| || ||||||| ||| ||| Sbjct 2957 AACATTCACAGTGAGACCTATTC---GTTGCTGATCGACACATACATTAAGGACCAGGCC 3013 Query 25774 GAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 || | |||| | || | ||||||||| | | || || | ||| |||||| Sbjct 3014 GACA-AGATGCACCTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAGAAAAAGGCGAA 3072 Query 25833 GTGGGCCATGAAGTGGATCAAC-AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| | |||||| | || || | | || | || | |||||| | |||| Sbjct 3073 TTGGGCCCTTAAGTGGTGCGACTCGCGACA-TGCCTCTTTCGCGGAGCGGTGCATCGCCT 3131 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | || || || |||||||| || |||||||| || || ||| |||||||||||||||||| Sbjct 3132 TCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGC-GCCATCTTCTGGCTCAAG 3190 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || | || || |||||||| || | | ||||| || Sbjct 3191 AAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCCGCGACGAAGGA 3250 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 || ||| | || |||||||| || || ||| || Sbjct 3251 CTGCACTGCGACTTTGCCTGTCTCCTTTACTCG 3283 >seq48315 Length=10477 Score = 197 bits (218), Expect = 3e-45 Identities = 455/675 (67%), Gaps = 14/675 (2%) Strand=Plus/Minus Query 221999 GGACACATCAGACTCCAGTGCTTGTT-GTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 || ||||| || |||||| | ||| |||| |||||||| |||||| ||||||||||| Sbjct 2297 GGGCACATGAGCGTCCAGTCCCCGTTCGTCTG-GACCCTCTCCATGAACAGGTCCGGGAT 2239 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| ||||| | || || || || | || || | ||| |||| ||| ||||| || Sbjct 2238 CCAGAGCGCGTAGAACAGGTCCCTCGCCCTCTCCATCTCGTTCCCGTGGTTCTTCCTAAG 2179 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCG--CCG 222175 || | || | || ||||| |||||||||||||| ||| ||| | || || || Sbjct 2178 GTCGAGGAAGGCGAAGATGTCCGCGTGCCACGGCTC--GATGTACGCCGCGATCGATCCC 2121 Query 222176 GGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTC 222235 | ||| ||| ||||| || || || | || |||||||| ||| || | Sbjct 2120 TTCCTCTTCCCGCCCCCCTGGTCGACGTACCGCGCCGTGTTGTTGAAGACGCGGAGCATG 2061 Query 222236 GGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGG 222295 || || | |||||||| ||||| |||||| ||||||| || || | | | Sbjct 2060 GGCACGATGCCGTTGGACGTGCCGTTCGTGCCCCGGATGTACGACGCGGACGCGCGGACG 2001 Query 222296 TTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 || | |||| |||||| || || |||| || ||| | |||||| ||||||| Sbjct 2000 TTCGAGATGGACAGGCCGATCCCCCCCGCGTACTTGCTGATGACCGCGCAGTTCTTGAGC 1941 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 ||||| ||||| || || ||||||||| ||||| | ||| || || ||||||| Sbjct 1940 GTGTCGTATATGCCGTCGATGGAGTCCTCCCTGACGCACGTCAGGAAGCAGCTCGACATC 1881 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTA 222475 || | |||| | | |||||| ||||||||||| ||||||| || ||| | || || Sbjct 1880 TGCGGGTTGGGCGTCCCGGCGTTGAACAGCGTGGGCGTGGCGTGGGTGAAG-AACCGCTG 1822 Query 222476 G-ACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGC 222534 | | || | ||||||||| | ||| || |||||| | || ||| ||| | || Sbjct 1821 GCTGAGGAGGTTGTACGTCTCGAGGACCCTCTCGATGTCGCCCATGTGTATCCCGACCGC 1762 Query 222535 GCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAG 222591 | | |||| | || |||||| | ||| | | | || || | || |||||| Sbjct 1761 GACGCGCATGAGGAGGTGCTGGGGACGCTCGGC-GATCTGGCCGTGCATCT--TGAGCAG 1705 Query 222592 GTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAAC 222651 ||| || || || || |||||||| || ||||||| || || ||||| | | |||| | Sbjct 1704 GTAGGACTTCTCGAGGGTCTTGAAGCCGAAGTAGTCGAACTCGAAGTCGCGGTCGTGGAG 1645 Query 222652 CACGGCGGCGTCCAG 222666 | |||| |||| || Sbjct 1644 GATGGCGCCGTCGAG 1630 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || |||||||| || ||||||||||||| || |||||||| |||||||| Sbjct 3309 GTACATGTTCGACGTGAACGGCTCTGTGCTCTCGTTGTTCCCGAGGATCTGGGCCGTGCT 3250 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 || |||||||| || |||| || || |||||||| Sbjct 3249 CGCCGTGGGCATCGGCGCCATGAGGAGGGAGTTGCGCA 3212 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || ||||| | |||||| | || |||| | ||||| || |||||| Sbjct 2680 GCCAGGTTGCAAACGGCGATCTCGTCGGGGCACGTGTACTCGACAATCTCGGTGCAGAGG 2621 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTT 221832 ||| ||||||||| || || |||| | || || ||||||| ||| ||| | ||||| Sbjct 2620 TTGGAGCACTTGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCCGTTG-CAGTGGTCCTT 2562 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 ||||||||| |||| ||| ||||| | ||| Sbjct 2561 GTAGAGCATGTAGGGCGTGCCGGTCTCGACCTG 2529 >seq24354 Length=8886 Score = 179 bits (198), Expect = 7e-40 Identities = 340/496 (69%), Gaps = 11/496 (2%) Strand=Plus/Minus Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 ||| || ||||| || ||||||||||| |||| ||| || ||||||||||||||||| || Sbjct 7242 GCTAGCAAGGTTGCAAACGGCCACCTCCTCCTCGTTTGTGTACTGTATGATCTCTGTGCA 7183 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || ||||||| || || || || |||| | ||||| ||| | || |||||||| Sbjct 7182 TAGATTGCTGCTCTGTATCGTGCCTAGGTTTTGCTGATTGCTCTTCCCGTTAGCAGCGTC 7123 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 ||| || || | | || ||| ||||| | || || | || || ||||||| Sbjct 7122 CTTATAAAGGAGGTACGGGTTGCCCGTCTCTATTTGCGCGTCGAGTATGGCCGCCCAGAG 7063 Query 221890 TTCTCTGGCGCTC--ACCGTCCTCTTGACTGCA--CCCTCGGTCTTTTCATACCCGGTAT 221945 | | |||||| | | | |||| ||| ||||| | || | | | || | Sbjct 7062 CTGCC--GCGCTCGTATCTGGCGCTTG--TGCCGTCCCTCCGACTCATACTTCTCG---T 7010 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | ||||||| ||| |||| |||| | ||||| |||||| | || |||| Sbjct 7009 AGAGCTTCTCAAACTGTTCGCCGTGGCACTCGCCGAGGCCAGGACACTCGTGAGGGCACA 6950 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 |||| ||||| || || | ||| | | |||||||||||| |||| ||| | | Sbjct 6949 TCAGGCTCCAAACTCCGTCCTCCTCGACGCGTTTCATGAAGAGGTCGGGGACCCATAACC 6890 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || |||| || | |||||||||||| || | |||||| | || | | | Sbjct 6889 CGTAGAACAGATTCCTTGCGCGCTGCTCCTCCTTTCCATGGTTTTTTCGGAGGTTGAGCA 6830 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 || |||||||| |||||||||||||| | || | ||| | |||||||| ||||| Sbjct 6829 CGTCGAAAATGTCGGCGTGCCACGGCTCGACGTATATGGCGAAGGCGCCGGGGCGCTTCC 6770 Query 222186 TGCCACCCTGATCCAC 222201 |||||||||||| || Sbjct 6769 CGCCACCCTGATCGAC 6754 >seq4998 Length=959 Score = 172 bits (190), Expect = 1e-37 Identities = 358/524 (68%), Gaps = 12/524 (2%) Strand=Plus/Minus Query 25526 AGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATT 25585 |||||||||||||| ||||| | | | |||| ||| | | || |||| ||| | Sbjct 959 AGATTGATCTGGCCGAGGACTTAAAGGACTGGGACGGCTTGACGAACAACGAAAGGCACT 900 Query 25586 TTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGT 25645 || || || | | || ||||| || || ||||| |||||||| |||||||| || | Sbjct 899 TTGTCTCCCACATCCTCGCCTTCTTCGCTGCGTCTGACGGTATAGTCAACGAGAACCTAT 840 Query 25646 GCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGA 25705 | | || ||| ||| || || || | || ||||||| |||||||||||| || || | Sbjct 839 GTGGGAACTTCGCCACCGAGGTTCAATCCGCCGAGGCCAGGTGTTTCTACGGATTTCAAA 780 Query 25706 TGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTA 25762 | ||| | ||||| | ||| |||| ||| | | | ||||| || ||||||| Sbjct 779 TTGCCGTTGAAAACATTCACAGTGAGACCTATTC---GTTGCTGATCGACACATACATTA 723 Query 25763 CAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAG 25821 ||| ||||| | |||| | || | ||||||||| | | || || | || Sbjct 722 AGGACCAGGCCGACA-AGATGCACCTCCTCAACGCCATCGAGACCGTGCCGTGCGTTCAG 664 Query 25822 AGGAAGGCGCGGTGGGCCATGAAGTGGATCAACA-GCCAGAGCGCTACGTTTGGCGAGCG 25880 | |||||| |||||| | |||||| | || || | | || | || | ||||| Sbjct 663 AAAAAGGCGAATTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCT-CTTTCGCGGAGCG 605 Query 25881 GCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCT 25939 | | ||||| || || || |||||||| || |||||||| || || |||| |||||| Sbjct 604 GTGCATCGCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCTTCTGCG-CCATCT 546 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999 ||||||||||| || ||| |||||| || || | || || |||||||| || | Sbjct 545 TCTGGCTCAAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACGAGCTTATTTCCC 486 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | ||||| || || ||| | || |||||||| || || ||| || Sbjct 485 GCGACGAAGGACTGCACTGCGACTTTGCCTGTCTCCTTTACTCG 442 >seq2764 Length=7933 Score = 109 bits (120), Expect = 1e-18 Identities = 284/418 (68%), Gaps = 25/418 (6%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCT-GTGCGAGAGATTCACCAG 25661 || ||||| || | | | || || || |||| || || || ||| ||||| || ||| Sbjct 4419 GCGTTCTTCGCGGGCGCGGACGGGATCGTGATGGAAAACCTCGTG-GAGAGGTTTTGCAG 4361 Query 25662 GGAAGTG-CAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 ||| || | || | |||||| ||| |||||||| |||||||||||||| |||| Sbjct 4360 GGAGGTTACCGTGCC-GGAGGCTCGGTGCTTCTACGGCTTCCAGATGGCCATGGAAAGCA 4302 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGTCGCCGA-- 25775 | ||| ||| |||| | |||||||| || ||||||| |||| | |||| Sbjct 4301 TCCACCAGGAGACGTATTC---ACTTCTGATCGATTCGTACAT---CGACGAC-CCGAAG 4249 Query 25776 GAGAGATCGG--CTGTTT--GGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || |||||| || || |||| | | || || || ||||||||||| Sbjct 4248 GAGAGGGAGGTCCTGTTTTCGGCGCACTCGA--CCGTGCCAAGTGTCGAGAGGAAGGCGA 4191 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| ||||| ||| ||| | ||| || || | |||| |||| | |||| Sbjct 4190 TATGGGCGCAGAAGTATATCGGGAGC---AACGCGACTTTCGCCGAGAGGCTAATCGCCT 4134 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | ||| |||| ||||| || || ||| || || || ||||| |||||||| ||| Sbjct 4133 TCGCTACTGTTGAGGGGATATTCTTCTCGGGGTCCTTCTGTGCCATATTCTGGCTGAAGA 4074 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || ||| |||||| || || ||| || || ||||| ||||| | |||||||| Sbjct 4073 AGCGGGGTCTCATGCCTGGACTCACCTTCTCGAATGAGCTGATCAGTCGAGACGAGGG 4016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928253915380480