Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq50892 84.2 5e-11 seq43102 84.2 5e-11 >seq50892 Length=141790 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 ||||| |||||||| || || ||||| |||||||||||| || ||||||| ||||| || Sbjct 91556 GCTGGAACAAAATATCGAGGGGAATTTGAAGAACGTATGAAACATATTATTGAAGAAGTT 91615 Query 48549 AAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGT 48608 || || | | ||| |||||| | ||||||||| | |||| || | || || ||| Sbjct 91616 AATAATCATGGAAAAACAATTTTAGTAATTGATGAAATTCATACAATAGTTGGAGCAGGT 91675 Query 48609 G 48609 | Sbjct 91676 G 91676 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 ||||| |||||||| || || ||||| |||||||||||| || ||||||| ||||| || Sbjct 120533 GCTGGAACAAAATATCGAGGGGAATTTGAAGAACGTATGAAACATATTATTGAAGAAGTT 120474 Query 48549 AAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGT 48608 || || | | ||| |||||| | ||||||||| | |||| || | || || ||| Sbjct 120473 AATAATCATGGAAAAACAATTTTAGTAATTGATGAAATTCATACAATAGTTGGAGCAGGT 120414 Query 48609 G 48609 | Sbjct 120413 G 120413 >seq43102 Length=56976 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48489 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48548 ||||| |||||||| || || ||||| |||||||||||| || ||||||| ||||| || Sbjct 32267 GCTGGAACAAAATATCGAGGGGAATTTGAAGAACGTATGAAACATATTATTGAAGAAGTT 32326 Query 48549 AAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGT 48608 || || | | ||| |||||| | ||||||||| | |||| || | || || ||| Sbjct 32327 AATAATCATGGAAAAACAATTTTAGTAATTGATGAAATTCATACAATAGTTGGAGCAGGT 32386 Query 48609 G 48609 | Sbjct 32387 G 32387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105736130172704