Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq50892 84.2 3e-11 seq43621 84.2 3e-11 seq43619 84.2 3e-11 seq40012 84.2 3e-11 seq36403 84.2 3e-11 seq36172 84.2 3e-11 seq33069 84.2 3e-11 >seq50892 Length=141790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 42095 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 42037 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 42036 CGAGTCTCGTCAGTCC 42021 >seq43621 Length=13184 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 1913 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 1971 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 1972 CGAGTCTCGTCAGTCC 1987 >seq43619 Length=5482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 2102 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 2160 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 2161 CGAGTCTCGTCAGTCC 2176 >seq40012 Length=5484 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 2103 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 2161 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 2162 CGAGTCTCGTCAGTCC 2177 >seq36403 Length=5407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 1998 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 2056 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 2057 CGAGTCTCGTCAGTCC 2072 >seq36172 Length=10912 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 769 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 827 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 828 CGAGTCTCGTCAGTCC 843 >seq33069 Length=5487 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169724 TTTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTT 169783 ||| ||||||||| ||| ||||| ||||| |||||||||||||||||| || ||| ||| Sbjct 3398 TTTGGGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCACGGCGGAAGTTGCGAGTT 3340 Query 169784 CGAGCCCCGTCAGTCC 169799 |||| | ||||||||| Sbjct 3339 CGAGTCTCGTCAGTCC 3324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777137309403200