Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq50892 185 6e-41 seq43102 185 6e-41 >seq50892 Length=141790 Score = 185 bits (204), Expect = 6e-41 Identities = 345/507 (68%), Gaps = 15/507 (3%) Strand=Plus/Minus Query 475649 CCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTT 475708 || |||||| ||| | | | |||| | ||| | || |||| | | ||||| | ||| Sbjct 101080 CCGGTTGAAAAAGCTTTAAAAGATGCAAAATTAGATCAATCTGGAATTAATGAAGTCGTT 101021 Query 475709 CTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAAT 475768 | ||||| |||||||| | |||||| ||| |||| | || ||| ||| | | Sbjct 101020 TTAGTAGGTGGTTCAACTCGTATTCCAGCTATACAAGAATTAGTTCAATC---TTTAACT 100964 Query 475769 GGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTC 475828 || ||||| |||| || |||||||| ||||||| ||| ||| ||| || ||| | Sbjct 100963 GGAAAAAAACCAAATAAATCAGTAAATCCAGATGAAGTTGTCGCAATTGGTGCAGCTATT 100904 Query 475829 CAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGAC 475888 ||||| | ||||||| ||||| |||| | | | |||| || | | || Sbjct 100903 CAAGCCGGTATTTTAGCAGGT-----------GAAATCACAGA-TATTTTATTATTAGAT 100856 Query 475889 GTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGAC 475948 || |||||| | ||| | ||| | |||||||| || || |||||||| || ||||||| Sbjct 100855 GTTACTCCATTATCACTTGGTGTCGAAACAGTAGGTGGTATTATGACAAAACTTATTGCT 100796 Query 475949 AGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAA 476008 ||||||| | || || ||||||||| || ||||||| || | ||||| ||| Sbjct 100795 CGAAATACAACAATTCCTGTTAAAAAATCAGAATTATTTTCAACCGCAGCAGATAACCAA 100736 Query 476009 ACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAA 476068 |||| || || || | || |||| |||||| || | || | ||||| | Sbjct 100735 ACAAACGTTGAAATTCATGTATTACAAGGAGAAAGAGAAATTGTTAGTGGAAATAAGAGT 100676 Query 476069 CTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 || |||| |||||| | ||||| |||||| ||||| | ||| ||| ||||||||| Sbjct 100675 CTAGGAAATTTTAAATTAGAAGGAATTCCTGAAGCTCCAAAAGGTCGTCCACAAATTGAA 100616 Query 476129 GTTACTTTTGATATTGATGCAAATGGT 476155 || || ||||||||| ||| ||||| Sbjct 100615 GTGACATTTGATATTAATGTTGATGGT 100589 Score = 163 bits (180), Expect = 2e-34 Identities = 131/158 (83%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 |||||||| || ||| | |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 101626 GGACAAGATGTGACTAAAGCAGTAATTACTGTACCAGCATATTTTAATGACTCTCAACGT 101567 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 || ||||| ||||| || | |||||| ||| || | ||| |||| |||||||||||| Sbjct 101566 CAGGCAACAGTTGATGCAGGTAAAATTGCTGGTATTGAAGTTCTACGAATTATTAATGAA 101507 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| || | |||||||| | |||||||| Sbjct 101506 CCAACAGCAGCTTCATTAGCTTATGGGTTAGATAAGAA 101469 Score = 127 bits (140), Expect = 1e-23 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||||| | |||||||||||||||||||||||| ||||||| || || |||| ||| ||| Sbjct 101481 CCATAAGCTAATGAAGCTGCTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCA 101540 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 ||||| | | ||| | |||||||| ||||| | ||||||||||| || || || ||| Sbjct 101541 ATTTTACCTGCATCAACTGTTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTA 101600 Query 290948 ATAACAGCtttttccactttctttttc-aaataattttctgccatttgt-tttatttcTA 291005 || || ||||| ||| |||| | | || |||| || || ||| || ||| || | Sbjct 101601 ATTACTGCTTTAGTCAC-ATCTTGTCCTAAGTAATCTTTTG-CATCAGTAATTAATTTTC 101658 Query 291006 TAAGTATTTGTGCGCAAATTTCTTCAGG 291033 ||| | |||||| | |||||||| || Sbjct 101659 TAATAACTTGTGCTGAGATTTCTTCTGG 101686 >seq43102 Length=56976 Score = 185 bits (204), Expect = 6e-41 Identities = 345/507 (68%), Gaps = 15/507 (3%) Strand=Plus/Plus Query 475649 CCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTT 475708 || |||||| ||| | | | |||| | ||| | || |||| | | ||||| | ||| Sbjct 51721 CCGGTTGAAAAAGCTTTAAAAGATGCAAAATTAGATCAATCTGGAATTAATGAAGTCGTT 51780 Query 475709 CTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAAT 475768 | ||||| |||||||| | |||||| ||| |||| | || ||| ||| | | Sbjct 51781 TTAGTAGGTGGTTCAACTCGTATTCCAGCTATACAAGAATTAGTTCAATC---TTTAACT 51837 Query 475769 GGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTC 475828 || ||||| |||| || |||||||| ||||||| ||| ||| ||| || ||| | Sbjct 51838 GGAAAAAAACCAAATAAATCAGTAAATCCAGATGAAGTTGTCGCAATTGGTGCAGCTATT 51897 Query 475829 CAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGAC 475888 ||||| | ||||||| ||||| |||| | | | |||| || | | || Sbjct 51898 CAAGCCGGTATTTTAGCAGGT-----------GAAATCACAGA-TATTTTATTATTAGAT 51945 Query 475889 GTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGAC 475948 || |||||| | ||| | ||| | |||||||| || || |||||||| || ||||||| Sbjct 51946 GTTACTCCATTATCACTTGGTGTCGAAACAGTAGGTGGTATTATGACAAAACTTATTGCT 52005 Query 475949 AGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAA 476008 ||||||| | || || ||||||||| || ||||||| || | ||||| ||| Sbjct 52006 CGAAATACAACAATTCCTGTTAAAAAATCAGAATTATTTTCAACCGCAGCAGATAACCAA 52065 Query 476009 ACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAA 476068 |||| || || || | || |||| |||||| || | || | ||||| | Sbjct 52066 ACAAACGTTGAAATTCATGTATTACAAGGAGAAAGAGAAATTGTTAGTGGAAATAAGAGT 52125 Query 476069 CTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAA 476128 || |||| |||||| | ||||| |||||| ||||| | ||| ||| ||||||||| Sbjct 52126 CTAGGAAATTTTAAATTAGAAGGAATTCCTGAAGCTCCAAAAGGTCGTCCACAAATTGAA 52185 Query 476129 GTTACTTTTGATATTGATGCAAATGGT 476155 || || ||||||||| ||| ||||| Sbjct 52186 GTGACATTTGATATTAATGTTGATGGT 52212 Score = 163 bits (180), Expect = 2e-34 Identities = 131/158 (83%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 |||||||| || ||| | |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 51175 GGACAAGATGTGACTAAAGCAGTAATTACTGTACCAGCATATTTTAATGACTCTCAACGT 51234 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 || ||||| ||||| || | |||||| ||| || | ||| |||| |||||||||||| Sbjct 51235 CAGGCAACAGTTGATGCAGGTAAAATTGCTGGTATTGAAGTTCTACGAATTATTAATGAA 51294 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| || | |||||||| | |||||||| Sbjct 51295 CCAACAGCAGCTTCATTAGCTTATGGGTTAGATAAGAA 51332 Score = 127 bits (140), Expect = 1e-23 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||||| | |||||||||||||||||||||||| ||||||| || || |||| ||| ||| Sbjct 51320 CCATAAGCTAATGAAGCTGCTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCA 51261 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 ||||| | | ||| | |||||||| ||||| | ||||||||||| || || || ||| Sbjct 51260 ATTTTACCTGCATCAACTGTTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTA 51201 Query 290948 ATAACAGCtttttccactttctttttc-aaataattttctgccatttgt-tttatttcTA 291005 || || ||||| ||| |||| | | || |||| || || ||| || ||| || | Sbjct 51200 ATTACTGCTTTAGTCAC-ATCTTGTCCTAAGTAATCTTTTG-CATCAGTAATTAATTTTC 51143 Query 291006 TAAGTATTTGTGCGCAAATTTCTTCAGG 291033 ||| | |||||| | |||||||| || Sbjct 51142 TAATAACTTGTGCTGAGATTTCTTCTGG 51115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265996195192016