Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq50892 480 2e-131 seq43102 480 2e-131 >seq50892 Length=141790 Score = 480 bits (532), Expect = 2e-131 Identities = 711/1001 (71%), Gaps = 10/1001 (1%) Strand=Plus/Plus Query 17831 TGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAG 17890 |||||||||||||| |||||||| || || ||||| |||||||| ||||| | || | Sbjct 85545 TGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAA 85604 Query 17891 GTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAAT 17950 | ||| | ||| | | ||||||||||| | || | ||| || | |||| Sbjct 85605 ATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAAC 85664 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||||||||| || || | || || ||||| || || |||||||| || Sbjct 85665 AGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGT 85724 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGT 18069 | ||| || | || ||||| ||| |||||||| |||| | | | || |||| Sbjct 85725 TAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGT 85783 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || ||| || |||||||| | | |||||||| || || || || || || || | Sbjct 85784 TGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 85843 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||||||||| || ||||| || || ||||| || || ||||| |||| Sbjct 85844 AAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTT 85903 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | | || | ||||| || | |||||||||||| |||||||| ||||||| Sbjct 85904 CACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGA 85963 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 |||| || |||||||| ||| ||||| || ||||| | ||| |||||||| ||||||| Sbjct 85964 ATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGA 86023 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 |||| |||||||| || |||||||| ||||| | ||||||||||||||||||| | Sbjct 86024 ATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 86083 Query 18370 CTTGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 |||| || | || || || | ||||||| |||| || ||||||||||| || || | Sbjct 86084 CTTGACCGATTGGGTATACTAAGAATACTGCAGAA-GCTGCTGCTACTGGAGCAGAGAAT 86142 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 || || | ||||| || |||||||||| | || || | |||||||| || |||||| Sbjct 86143 GCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATG 86202 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| ||| | || | | ||||| || || || | ||| || || || ||||| ||| Sbjct 86203 TAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTAT 86262 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 |||||||| || | | || ||||||||||||||||||||||| | ||| || ||||| Sbjct 86263 AACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTT 86322 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || |||| | ||| ||||| ||||||||||| || || | ||| | |||| || Sbjct 86323 GAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACT 86382 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC---AATCAAAAAT 18725 || ||||| |||||||| || || || |||||||| || | ||| || || ||| | Sbjct 86383 GGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAA 86442 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | |||||| ||||| | | ||| | ||| | |||||||| || | ||| | Sbjct 86443 GAAGTAGCT---GTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAA 86499 Query 18786 CGGTTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 ||||| | ||||| |||| ||| | || || | ||||| Sbjct 86500 CGGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 86540 Score = 480 bits (532), Expect = 2e-131 Identities = 711/1001 (71%), Gaps = 10/1001 (1%) Strand=Plus/Minus Query 17831 TGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAG 17890 |||||||||||||| |||||||| || || ||||| |||||||| ||||| | || | Sbjct 126544 TGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAA 126485 Query 17891 GTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAAT 17950 | ||| | ||| | | ||||||||||| | || | ||| || | |||| Sbjct 126484 ATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAAC 126425 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||||||||| || || | || || ||||| || || |||||||| || Sbjct 126424 AGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGT 126365 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGT 18069 | ||| || | || ||||| ||| |||||||| |||| | | | || |||| Sbjct 126364 TAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGT 126306 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || ||| || |||||||| | | |||||||| || || || || || || || | Sbjct 126305 TGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 126246 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||||||||| || ||||| || || ||||| || || ||||| |||| Sbjct 126245 AAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTT 126186 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | | || | ||||| || | |||||||||||| |||||||| ||||||| Sbjct 126185 CACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGA 126126 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 |||| || |||||||| ||| ||||| || ||||| | ||| |||||||| ||||||| Sbjct 126125 ATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGA 126066 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 |||| |||||||| || |||||||| ||||| | ||||||||||||||||||| | Sbjct 126065 ATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 126006 Query 18370 CTTGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 |||| || | || || || | ||||||| ||||| | ||||||||||| || || | Sbjct 126005 CTTGACCGATTGGGTATACTAAGAATACTGCAGAAG-CTGCTGCTACTGGAGCAGAGAAT 125947 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 || || | ||||| || |||||||||| | || || | |||||||| || |||||| Sbjct 125946 GCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATG 125887 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| ||| | || | | ||||| || || || | ||| || || || ||||| ||| Sbjct 125886 TAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTAT 125827 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 |||||||| || | | || ||||||||||||||||||||||| | ||| || ||||| Sbjct 125826 AACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTT 125767 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || |||| | ||| ||||| ||||||||||| || || | ||| | |||| || Sbjct 125766 GAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACT 125707 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC---AATCAAAAAT 18725 || ||||| |||||||| || || || |||||||| || | ||| || || ||| | Sbjct 125706 GGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAA 125647 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | |||||| ||||| | | ||| | ||| | |||||||| || | ||| | Sbjct 125646 GAAGTAGCT---GTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAA 125590 Query 18786 CGGTTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 ||||| | ||||| |||| ||| | || || | ||||| Sbjct 125589 CGGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 125549 >seq43102 Length=56976 Score = 480 bits (532), Expect = 2e-131 Identities = 711/1001 (71%), Gaps = 10/1001 (1%) Strand=Plus/Plus Query 17831 TGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAG 17890 |||||||||||||| |||||||| || || ||||| |||||||| ||||| | || | Sbjct 26256 TGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAA 26315 Query 17891 GTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAAT 17950 | ||| | ||| | | ||||||||||| | || | ||| || | |||| Sbjct 26316 ATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAAC 26375 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||||||||| || || | || || ||||| || || |||||||| || Sbjct 26376 AGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGT 26435 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGT 18069 | ||| || | || ||||| ||| |||||||| |||| | | | || |||| Sbjct 26436 TAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGT 26494 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || ||| || |||||||| | | |||||||| || || || || || || || | Sbjct 26495 TGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGT 26554 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||||||||| || ||||| || || ||||| || || ||||| |||| Sbjct 26555 AAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTT 26614 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | | || | ||||| || | |||||||||||| |||||||| ||||||| Sbjct 26615 CACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGA 26674 Query 18250 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGA 18309 |||| || |||||||| ||| ||||| || ||||| | ||| |||||||| ||||||| Sbjct 26675 ATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGA 26734 Query 18310 ATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCC 18369 |||| |||||||| || |||||||| ||||| | ||||||||||||||||||| | Sbjct 26735 ATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAAC 26794 Query 18370 CTTGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 |||| || | || || || | ||||||| |||| || ||||||||||| || || | Sbjct 26795 CTTGACCGATTGGGTATACTAAGAATACTGCAGAA-GCTGCTGCTACTGGAGCAGAGAAT 26853 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 || || | ||||| || |||||||||| | || || | |||||||| || |||||| Sbjct 26854 GCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATG 26913 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 ||| ||| | || | | ||||| || || || | ||| || || || ||||| ||| Sbjct 26914 TAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTAT 26973 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 |||||||| || | | || ||||||||||||||||||||||| | ||| || ||||| Sbjct 26974 AACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTT 27033 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || |||| | ||| ||||| ||||||||||| || || | ||| | |||| || Sbjct 27034 GAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACT 27093 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC---AATCAAAAAT 18725 || ||||| |||||||| || || || |||||||| || | ||| || || ||| | Sbjct 27094 GGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAA 27153 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | |||||| ||||| | | ||| | ||| | |||||||| || | ||| | Sbjct 27154 GAAGTAGCT---GTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAAA 27210 Query 18786 CGGTTGTTTGTACTCGTAACCCAGTCACATAAACTTTCCCA 18826 ||||| | ||||| |||| ||| | || || | ||||| Sbjct 27211 CGGTTTTCAGTACTTGTAATCCAAGCGCAGAAGCGCTCCCA 27251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151226951859848