Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq50892 508 2e-139 seq43102 508 2e-139 >seq50892 Length=141790 Score = 508 bits (562), Expect = 2e-139 Identities = 649/893 (73%), Gaps = 6/893 (1%) Strand=Plus/Plus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 ||||||||||| ||||| || || ||||| || || | || | | |||||||||| Sbjct 85561 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATG 85620 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 || |||||||| ||||| || || | || | || | | | | ||||||||| |||||| Sbjct 85621 ATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAACAGATTGGTTGAAGTTG 85680 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 ||||| || |||||||| ||||| ||| | || | | || ||||| ||||||| | Sbjct 85681 AAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCTAAA 85740 Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 || ||||| ||| | ||||| || | | ||| || || || || ||| |||||| Sbjct 85741 ACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTATTGG 85800 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 ||||| | |||||||| || ||||| ||||| || || |||||||| ||||| |||||| Sbjct 85801 AAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGA 85860 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 || || |||||||| ||||| ||| | | |||||| || ||||| || | || Sbjct 85861 CCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTAGAA 85920 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || || | ||||||||||||| ||| ||| ||||| ||||| || || ||||| Sbjct 85921 GTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACACCA 85980 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 |||||| || || ||||| | || ||||| ||||| ||||| || | |||| |||| Sbjct 85981 GCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAGTTA 86040 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || || || || || |||||| ||||||| ||||| || || || | || || Sbjct 86041 AAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTAT 86100 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 || | ||| || |||| || || || || ||||||||| | || || |||||||| || Sbjct 86101 ACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAAGGA 86160 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA---GCAAAGACGCCA 22139 | ||| |||| || ||||| | |||||| || || ||||||||| ||| || || Sbjct 86161 CGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCA---ACACCT 86217 Query 22140 ATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGT 22199 | | |||||| || ||| | | |||| | ||||| |||||||| | ||| ||||||| | Sbjct 86218 AATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACT 86277 Query 22200 GTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACG 22259 | ||| |||||||| |||||||||||||| | || || || || || || | || Sbjct 86278 GAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACT 86337 Query 22260 GCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCA 22319 || ||||| |||||||||||||| || || | || || || || ||||| ||||| ||| Sbjct 86338 GCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCA 86397 Query 22320 TCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 ||||| || || || || || | | ||| ||||| || ||||||| ||||| Sbjct 86398 TCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGC 86450 Score = 508 bits (562), Expect = 2e-139 Identities = 651/893 (73%), Gaps = 6/893 (1%) Strand=Plus/Minus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 ||||||||||| ||||| || || ||||| || || | || | | |||||||||| Sbjct 126528 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATG 126469 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 || |||||||| ||||| || || | || | || | | | | ||||||||| |||||| Sbjct 126468 ATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAACAGATTGGTTGAAGTTG 126409 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 ||||| || |||||||| ||||| ||| | || | | || ||||| ||||||| | Sbjct 126408 AAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCTAAA 126349 Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 || ||||| ||| | ||||| || | | ||| || || || || ||| |||||| Sbjct 126348 ACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTATTGG 126289 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 ||||| | |||||||| || ||||| ||||| || || |||||||| ||||| |||||| Sbjct 126288 AAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGA 126229 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 || || |||||||| ||||| ||| | | |||||| || ||||| || | || Sbjct 126228 CCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTAGAA 126169 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || || | ||||||||||||| ||| ||| ||||| ||||| || || ||||| Sbjct 126168 GTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACACCA 126109 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 |||||| || || ||||| | || ||||| ||||| ||||| || | |||| |||| Sbjct 126108 GCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAGTTA 126049 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || || || || || |||||| ||||||| ||||| || || || | || || Sbjct 126048 AAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTAT 125989 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 || | ||| || |||| || || || || ||||||||| | || || |||||||| || Sbjct 125988 ACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAAGGA 125929 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA---GCAAAGACGCCA 22139 | ||| |||| || ||||| | |||||| || || ||||||||| |||| || | | Sbjct 125928 CGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAAC-AC-CTA 125871 Query 22140 ATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGT 22199 || || ||||| || ||| | | |||| | ||||| |||||||| | ||| ||||||| | Sbjct 125870 ATAAG-AAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACT 125812 Query 22200 GTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACG 22259 | ||| |||||||| |||||||||||||| | || || || || || || | || Sbjct 125811 GAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACT 125752 Query 22260 GCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCA 22319 || ||||| |||||||||||||| || || | || || || || ||||| ||||| ||| Sbjct 125751 GCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCA 125692 Query 22320 TCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 ||||| || || || || || | | ||| ||||| || ||||||| ||||| Sbjct 125691 TCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGC 125639 >seq43102 Length=56976 Score = 508 bits (562), Expect = 2e-139 Identities = 649/893 (73%), Gaps = 6/893 (1%) Strand=Plus/Plus Query 21483 GGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGA 21542 ||||||||||| ||||| || || ||||| || || | || | | |||||||||| Sbjct 26272 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATG 26331 Query 21543 ATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTG 21602 || |||||||| ||||| || || | || | || | | | | ||||||||| |||||| Sbjct 26332 ATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCAACAACAGATTGGTTGAAGTTG 26391 Query 21603 AAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACA 21662 ||||| || |||||||| ||||| ||| | || | | || ||||| ||||||| | Sbjct 26392 AAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCTAAA 26451 Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 || ||||| ||| | ||||| || | | ||| || || || || ||| |||||| Sbjct 26452 ACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTATTGG 26511 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 ||||| | |||||||| || ||||| ||||| || || |||||||| ||||| |||||| Sbjct 26512 AAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGA 26571 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 || || |||||||| ||||| ||| | | |||||| || ||||| || | || Sbjct 26572 CCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTAGAA 26631 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || || | ||||||||||||| ||| ||| ||||| ||||| || || ||||| Sbjct 26632 GTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACACCA 26691 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 |||||| || || ||||| | || ||||| ||||| ||||| || | |||| |||| Sbjct 26692 GCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAGTTA 26751 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || || || || || |||||| ||||||| ||||| || || || | || || Sbjct 26752 AAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTAT 26811 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 || | ||| || |||| || || || || ||||||||| | || || |||||||| || Sbjct 26812 ACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAAGGA 26871 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA---GCAAAGACGCCA 22139 | ||| |||| || ||||| | |||||| || || ||||||||| ||| || || Sbjct 26872 CGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCA---ACACCT 26928 Query 22140 ATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGT 22199 | | |||||| || ||| | | |||| | ||||| |||||||| | ||| ||||||| | Sbjct 26929 AATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACT 26988 Query 22200 GTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACG 22259 | ||| |||||||| |||||||||||||| | || || || || || || | || Sbjct 26989 GAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACT 27048 Query 22260 GCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCA 22319 || ||||| |||||||||||||| || || | || || || || ||||| ||||| ||| Sbjct 27049 GCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCA 27108 Query 22320 TCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 ||||| || || || || || | | ||| ||||| || ||||||| ||||| Sbjct 27109 TCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGC 27161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146119640291760