Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq45459 134 2e-26 seq4998 134 2e-26 seq2764 116 4e-21 seq50892 91.5 2e-13 seq43102 91.5 2e-13 seq2697 91.5 2e-13 seq24354 82.4 9e-11 >seq45459 Length=4245 Score = 134 bits (148), Expect = 2e-26 Identities = 350/526 (67%), Gaps = 22/526 (4%) Strand=Plus/Plus Query 64891 TTCTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| || |||| |||| | ||||| |||| | || || ||||| ||| Sbjct 2930 TTCTACGGATTTCAAATTGCCGT--TGAAAACATTCACAGTGAGACCTATTCGTTGCTGA 2987 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTG 65008 | |||| |||||||||||| | || |||| ||| | | | |||||| | || | Sbjct 2988 TCGACACATACATTAAGGACCAGGCCGACAAGATGCACCTCCTCAACGCCATCGAGACCG 3047 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 | || || || |||| |||||||| ||||| | || |||| ||| | | || Sbjct 3048 TGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCT 3107 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | ||||| ||||| | || || || || ||||| || |||||| ||| || | Sbjct 3108 CTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCT 3167 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||||| || | ||| | |||||||| || |||||||| || || || |||||||| | Sbjct 3168 TCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACG 3227 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTT 65248 | ||||||||||| || || || || ||| || |||||| || ||| | ||| Sbjct 3228 AGCTTATTTCCCGCGACGAAGGACTGCACTGCGACTTTGCC-TG----TCTCCTTTACT- 3281 Query 65249 TGCGTAATAGACCCACTA-----CCGAA---ACTATCCACGCCATCGTGAAAGAGGCGGT 65300 || || | || | ||||| | ||| || || || | | || || Sbjct 3282 --CGAAACTGGTGAACAAGGTGCCCGAAAGCAGGATCGTCGAGATTGTAACCCACGCTGT 3339 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTC 65360 ||||| ||||| | ||| || | |||||||| || | | || ||||| |||||||| Sbjct 3340 CGAGATCGAGAAGGAGTTTGTCGTCGACGCACTTCCTGTTGAACTTATCGGCATGAACTC 3399 Query 65361 TGAGAAGATGTCCGAGTACATTGAG-TATGTGTCGGATCGTCTCCT 65405 | |||| | ||||||||||| | |||| | || |||||||| Sbjct 3400 GGGCCTCATGTGCCAGTACATTGAGTTCTGTG-CCGACCGTCTCCT 3444 >seq4998 Length=959 Score = 134 bits (148), Expect = 2e-26 Identities = 350/526 (67%), Gaps = 22/526 (4%) Strand=Plus/Minus Query 64891 TTCTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| || |||| |||| | ||||| |||| | || || ||||| ||| Sbjct 795 TTCTACGGATTTCAAATTGCCGT--TGAAAACATTCACAGTGAGACCTATTCGTTGCTGA 738 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTG 65008 | |||| |||||||||||| | || |||| ||| | | | |||||| | || | Sbjct 737 TCGACACATACATTAAGGACCAGGCCGACAAGATGCACCTCCTCAACGCCATCGAGACCG 678 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 | || || || |||| |||||||| ||||| | || |||| ||| | | || Sbjct 677 TGCCGTGCGTTCAGAAAAAGGCGAATTGGGCCCTTAAGTGGTGCGACTCGCGACATGCCT 618 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | ||||| ||||| | || || || || ||||| || |||||| ||| || | Sbjct 617 CTTTCGCGGAGCGGTGCATCGCCTTCGCCGCCGTCGAGGGCATTTTCTTCAGCGGATCCT 558 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||||| || | ||| | |||||||| || |||||||| || || || |||||||| | Sbjct 557 TCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCTGGTCTCTGTTTCTCAAACG 498 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTT 65248 | ||||||||||| || || || || ||| || |||||| || ||| | ||| Sbjct 497 AGCTTATTTCCCGCGACGAAGGACTGCACTGCGACTTTGCC-TG----TCTCCTTTACT- 444 Query 65249 TGCGTAATAGACCCACTA-----CCGAA---ACTATCCACGCCATCGTGAAAGAGGCGGT 65300 || || | || | ||||| | ||| || || || | | || || Sbjct 443 --CGAAACTGGTGAACAAGGTGCCCGAAAGCAGGATCGTCGAGATTGTAACCCACGCTGT 386 Query 65301 TGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTC 65360 ||||| ||||| | ||| || | |||||||| || | | || ||||| |||||||| Sbjct 385 CGAGATCGAGAAGGAGTTTGTCGTCGACGCACTTCCTGTTGAACTTATCGGCATGAACTC 326 Query 65361 TGAGAAGATGTCCGAGTACATTGAG-TATGTGTCGGATCGTCTCCT 65405 | |||| | ||||||||||| | |||| | || |||||||| Sbjct 325 GGGCCTCATGTGCCAGTACATTGAGTTCTGTG-CCGACCGTCTCCT 281 >seq2764 Length=7933 Score = 116 bits (128), Expect = 4e-21 Identities = 305/453 (67%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||||||| | || | || || || ||| ||||| || |||||||| ||||| ||| Sbjct 4155 TTCGCCGAGAGGCTAATCGCCTTCGCTACTGTTGAGGGGATATTCTTCTCGGGGTCCTTC 4096 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 || || || | ||| |||||||||||||||||||||| || || |||||| ||||| Sbjct 4095 TGTGCCATATTCTGGCTGAAGAAGCGGGGTCTCATGCCTGGACTCACCTTCTCGAATGAG 4036 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGC--TCTTCAAGACT 65247 || || ||||| ||||| | ||| |||| |||| ||| | ||| | || Sbjct 4035 CTGATCAGTCGAGACGAGGGGTTGCACTGCTCATTTG-CGTGTCAGCTGTATTCCAAAC- 3978 Query 65248 TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307 | || | | || || |||| | ||| | | ||| || || || | Sbjct 3977 -TCAAAAACAAGCTGACGCAGGAGCATATCAATCGCATAATAAGAGAAGCAGTAGATGTC 3919 Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATC-TCATCGGTATGAACTCTGAGAA 65366 || || | ||||||| || || || || || | | | ||||| ||||| || | Sbjct 3918 GAAAAGAGCTTCATCTGCGATGCGCTTCC-CGTCAGCTTGATCGGGATGAATTCAGGCCT 3860 Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCA-C 65425 ||| | | || || |||| |||| |||||||| | ||| | | | ||||||| | | | Sbjct 3859 CATGGGCCAATATATCGAGTTTGTGGCGGATCGTATGCTC-ACCGACTTGGGGTACGAGC 3801 Query 65426 CCATTTGGA-ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAG 65484 | ||| | | || |||||||| || || | ||||| | || |||||||| || ||| Sbjct 3800 CGCTTTACAGAAGC-AAGAATCCGTTCGATTGGATGGACATGATCAGCCTTGAAGGCAAG 3742 Query 65485 ACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 || || |||||||||||| | || || || ||| Sbjct 3741 ACAAATTTCTTTGAGAAGAGGGTGGGCGAATAT 3709 >seq50892 Length=141790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/292 (67%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||| | || | ||||| | ||||| ||| | || ||| || Sbjct 1938 TTTGTGGAGATGTTTATCGGGATTGGTGCTGCCCGAGTTCGAGATTTATTCCAAAAGGCT 1997 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 |||||| || |||||||| || |||||||| |||||||| || || | |||| Sbjct 1998 TCAGAAAATGCGCCTTGTATTGTTTTTATTGATGAAATTGATGCCGTAGGTAGAGAACGT 2057 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||||||| | | ||| || || | || |||||| | ||||||||| | || Sbjct 2058 GGTGCTGGTGTTGGTGGTGGAAACGATGAACGTGAGCAAACACTAAATCAACTATTAACA 2117 Query 175576 GAGATGGATGGCTTT---GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || |||||||| ||| || ||| | || ||| ||| ||| || || ||||| Sbjct 2118 GAAATGGATGGTTTTAAAGAAAATAAAGGTGTAATT---GTTGTTGGTGCTACAAATCGT 2174 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG-CAAG 175683 || || || | |||| || | | || || || || |||||||| |||| Sbjct 2175 GTAGACATTTTAGATGCTGCATTATTACGACCTGGACGATTTGATCGTCAAG 2226 >seq43102 Length=56976 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/292 (67%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||| | || | ||||| | ||||| ||| | || ||| || Sbjct 9071 TTTGTGGAGATGTTTATCGGGATTGGTGCTGCCCGAGTTCGAGATTTATTCCAAAAGGCT 9012 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 |||||| || |||||||| || |||||||| |||||||| || || | |||| Sbjct 9011 TCAGAAAATGCGCCTTGTATTGTTTTTATTGATGAAATTGATGCCGTAGGTAGAGAACGT 8952 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | ||||||| | | ||| || || | || |||||| | ||||||||| | || Sbjct 8951 GGTGCTGGTGTTGGTGGTGGAAACGATGAACGTGAGCAAACACTAAATCAACTATTAACA 8892 Query 175576 GAGATGGATGGCTTT---GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || |||||||| ||| || ||| | || ||| ||| ||| || || ||||| Sbjct 8891 GAAATGGATGGTTTTAAAGAAAATAAAGGTGTAATT---GTTGTTGGTGCTACAAATCGT 8835 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCG-CAAG 175683 || || || | |||| || | | || || || || |||||||| |||| Sbjct 8834 GTAGACATTTTAGATGCTGCATTATTACGACCTGGACGATTTGATCGTCAAG 8783 >seq2697 Length=14000 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 14362 GGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAA 14421 |||||| ||||| || || ||| | || || ||| ||| || ||| | ||||| | || Sbjct 10705 GGATGGGCTCAAACCCTCTCAGCGCAAGGTCTTGTTTGCGTGTTTCAAGAAGAAATTGAA 10646 Query 14422 GGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCA 14481 | || || ||||| || || || || | ||| | | ||| | || ||||| ||||| Sbjct 10645 AAACGAGATCAAGGTTGCTCAGCTTGCAGGATACATTGGGGAACATTCGGCGTATCACCA 10586 Query 14482 TGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAA 14541 || ||| | || || | |||| | || |||| | |||| || || || Sbjct 10585 CGGGGAAATGTCATTGAATGGCACGGTCATTGGCATGGCCCAATCCTACTGCGGATCGAA 10526 Query 14542 CAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 |||||| ||||||||| | || | |||||||||||||| |||| ||||| || ||| Sbjct 10525 CAACATCAACCTTCTTTACCCTAGCGGTCAATTTGGTACCCGTCGAATGGGAGGCAAG 10468 >seq24354 Length=8886 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 76740 TCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCG 76799 ||||| | || ||| || || ||||| || ||||||| || |||| |||||||||| Sbjct 8042 TCAAGGAGCTGTACAAGACGGTTTGGGAGATGAAGATGAGGGACCTCATCGACATGGCCG 8101 Query 76800 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 76847 | || | || || ||||||||||| || || ||| |||||||||||| Sbjct 8102 CGGACAGGGGACGGTTCATTGATCAGAGCCAGAGTCTGAATCTATTCA 8149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596190092248960