Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq50892 724 0.0 seq43102 724 0.0 >seq50892 Length=141790 Score = 724 bits (802), Expect = 0.0 Identities = 758/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| | || ||||| ||||||||||||||||| || || | ||| ||||| ||||||||| Sbjct 85540 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 85599 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 ||||| | || | ||| | | ||| ||||||| ||| | ||| | | |||| Sbjct 85600 CCTAAATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCA 85659 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 ||||| |||||||| ||||| || ||||| | ||| ||||||||||| | |||||||||| Sbjct 85660 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATA 85719 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 ||||||||||| | || || |||||| || ||| | ||||||||| | | | | Sbjct 85720 GAAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG 85779 Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 ||||| || || || || ||||||||||| | ||||||||| || || ||||| || || Sbjct 85780 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 85839 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 || || || |||||||||||||| || || ||||| ||||| || || | ||||||| Sbjct 85840 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTT 85899 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || | ||||| | ||| || ||||| |||||||||||||||||||| | || ||| Sbjct 85900 GTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCA 85959 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | ||| || || || ||||| ||||| || ||||| | ||||| || || ||| Sbjct 85960 CCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCT 86019 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 |||||||| |||||||||||||| |||||||| ||||||| |||||| ||||||||||| Sbjct 86020 TGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 86079 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 ||||| ||||| | ||| ||||||||||| ||||| |||| || | |||||||||| Sbjct 86080 GAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 86139 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||||| ||||||| || | ||||||||| ||||| ||| ||||| | | |||| Sbjct 86140 AATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCC 86199 Query 8542 ATGTAAGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 |||||| | || || ||||| |||||| || | | || || || ||||| ||||| Sbjct 86200 ATGTAACTTGCAACACCTAATAA-GAAGTGTAAAACGATTAATTGGTAAGGACCACCGTT 86258 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || ||||||||||| | || || |||||||| || || |||||||| | |||||||| Sbjct 86259 GTATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGC 86318 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 ||| ||| || | || ||||| |||||||||||||| || || | || |||||||| Sbjct 86319 GTTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGC 86378 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 || |||||||| ||||| |||||||| || || ||||| || ||||| || | ||| || Sbjct 86379 TACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAA 86438 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 |||| || ||| | ||| || |||||| ||||| | ||||||||||||| || | Sbjct 86439 ACAAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAA 86498 Query 8841 TCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | ||| | |||||||||| ||| |||| || Sbjct 86499 ACGGTTTTCAGTACTTGTAATCCAAGCGCAGAA 86531 Score = 724 bits (802), Expect = 0.0 Identities = 758/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| | || ||||| ||||||||||||||||| || || | ||| ||||| ||||||||| Sbjct 126549 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 126490 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 ||||| | || | ||| | | ||| ||||||| ||| | ||| | | |||| Sbjct 126489 CCTAAATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCA 126430 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 ||||| |||||||| ||||| || ||||| | ||| ||||||||||| | |||||||||| Sbjct 126429 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATA 126370 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 ||||||||||| | || || |||||| || ||| | ||||||||| | | | | Sbjct 126369 GAAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG 126310 Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 ||||| || || || || ||||||||||| | ||||||||| || || ||||| || || Sbjct 126309 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 126250 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 || || || |||||||||||||| || || ||||| ||||| || || | ||||||| Sbjct 126249 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTT 126190 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || | ||||| | ||| || ||||| |||||||||||||||||||| | || ||| Sbjct 126189 GTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCA 126130 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | ||| || || || ||||| ||||| || ||||| | ||||| || || ||| Sbjct 126129 CCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCT 126070 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 |||||||| |||||||||||||| |||||||| ||||||| |||||| ||||||||||| Sbjct 126069 TGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 126010 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 ||||| ||||| | ||| ||||||||||| ||||| |||| || | |||||||||| Sbjct 126009 GAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 125950 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||||| ||||||| || | ||||||||| ||||| ||| ||||| | | |||| Sbjct 125949 AATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCC 125890 Query 8542 ATGTAAGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 |||||| | || || |||||| ||||| || | | || || || ||||| ||||| Sbjct 125889 ATGTAACTTGCAACACCTAATAAG-AAGTGTAAAACGATTAATTGGTAAGGACCACCGTT 125831 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || ||||||||||| | || || |||||||| || || |||||||| | |||||||| Sbjct 125830 GTATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGC 125771 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 ||| ||| || | || ||||| |||||||||||||| || || | || |||||||| Sbjct 125770 GTTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGC 125711 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 || |||||||| ||||| |||||||| || || ||||| || ||||| || | ||| || Sbjct 125710 TACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAA 125651 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 |||| || ||| | ||| || |||||| ||||| | ||||||||||||| || | Sbjct 125650 ACAAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAA 125591 Query 8841 TCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | ||| | |||||||||| ||| |||| || Sbjct 125590 ACGGTTTTCAGTACTTGTAATCCAAGCGCAGAA 125558 >seq43102 Length=56976 Score = 724 bits (802), Expect = 0.0 Identities = 758/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| | || ||||| ||||||||||||||||| || || | ||| ||||| ||||||||| Sbjct 26251 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 26310 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 ||||| | || | ||| | | ||| ||||||| ||| | ||| | | |||| Sbjct 26311 CCTAAATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATCA 26370 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 ||||| |||||||| ||||| || ||||| | ||| ||||||||||| | |||||||||| Sbjct 26371 ACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATA 26430 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 ||||||||||| | || || |||||| || ||| | ||||||||| | | | | Sbjct 26431 GAAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAG 26490 Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 ||||| || || || || ||||||||||| | ||||||||| || || ||||| || || Sbjct 26491 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATG 26550 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 || || || |||||||||||||| || || ||||| ||||| || || | ||||||| Sbjct 26551 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTT 26610 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || | ||||| | ||| || ||||| |||||||||||||||||||| | || ||| Sbjct 26611 GTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCA 26670 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | ||| || || || ||||| ||||| || ||||| | ||||| || || ||| Sbjct 26671 CCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCT 26730 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 |||||||| |||||||||||||| |||||||| ||||||| |||||| ||||||||||| Sbjct 26731 TGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAA 26790 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 ||||| ||||| | ||| ||||||||||| ||||| |||| || | |||||||||| Sbjct 26791 GAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 26850 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||||| ||||||| || | ||||||||| ||||| ||| ||||| | | |||| Sbjct 26851 AATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCC 26910 Query 8542 ATGTAAGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 |||||| | || || ||||| |||||| || | | || || || ||||| ||||| Sbjct 26911 ATGTAACTTGCAACACCTAATAA-GAAGTGTAAAACGATTAATTGGTAAGGACCACCGTT 26969 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || ||||||||||| | || || |||||||| || || |||||||| | |||||||| Sbjct 26970 GTATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGC 27029 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 ||| ||| || | || ||||| |||||||||||||| || || | || |||||||| Sbjct 27030 GTTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGC 27089 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 || |||||||| ||||| |||||||| || || ||||| || ||||| || | ||| || Sbjct 27090 TACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAA 27149 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 |||| || ||| | ||| || |||||| ||||| | ||||||||||||| || | Sbjct 27150 ACAAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTATAA 27209 Query 8841 TCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | ||| | |||||||||| ||| |||| || Sbjct 27210 ACGGTTTTCAGTACTTGTAATCCAAGCGCAGAA 27242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615470619134240