Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq50892 508 2e-139 seq43102 508 2e-139 >seq50892 Length=141790 Score = 508 bits (562), Expect = 2e-139 Identities = 649/893 (73%), Gaps = 6/893 (1%) Strand=Plus/Minus Query 41315 GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATC 41374 ||||| ||||||| || ||||| ||| | | || || || || || |||||||| ||| Sbjct 86450 GCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATC 86391 Query 41375 CGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTT 41434 || ||||| || || || || | || || |||||||||||||| ||||| || || | Sbjct 86390 CGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATC 86331 Query 41435 CCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGAT 41494 || || || || || || | |||||||||||||| |||||||| ||| || ||||| Sbjct 86330 CCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGAT 86271 Query 41495 GAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTC 41554 || ||| | |||||||| ||||| | |||| | | ||| || |||||| | | || || Sbjct 86270 GAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT- 86212 Query 41555 TTTGC---TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGG 41611 ||| ||||||||| || || |||||| | ||||| || |||| ||| | || ||| Sbjct 86211 --TGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGG 86154 Query 41612 ATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCG 41671 ||||| || || | ||||||||| || || || || |||| || ||| | || || || Sbjct 86153 ATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCA 86094 Query 41672 TTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTAC 41731 | || || || ||||| ||||||| |||||| || || || || || || || |||| | Sbjct 86093 ATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTC 86034 Query 41732 ATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTG 41791 ||| | || ||||| ||||| ||||| || | ||||| || || |||||| ||||| Sbjct 86033 ATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTT 85974 Query 41792 GCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCA 41851 || || ||||| ||||| ||| ||| ||||||||||||| | || || || Sbjct 85973 GCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGT 85914 Query 41852 CTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAG 41911 | || ||||| || |||||| | | ||| ||||| |||||||| || |||||||| Sbjct 85913 TTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAA 85854 Query 41912 GAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971 ||||| |||||||| || || ||||| ||||| || |||||||| | ||||||||||| Sbjct 85853 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATAC 85794 Query 41972 GCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGT 42031 ||| || || || || ||| | | || ||||| | ||| ||||| ||| ||||| Sbjct 85793 GCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGT 85734 Query 42032 ATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTT 42091 || ||||| || | | || | ||| ||||| |||||||| || ||||||||||| Sbjct 85733 ATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTC 85674 Query 42092 AACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAAC 42151 ||||||||| | | | | || | || | || || ||||| |||||||| || ||||| Sbjct 85673 AACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAAC 85614 Query 42152 CGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCC 42204 ||||| | | || | || || ||||| || || ||||| ||||||||||| Sbjct 85613 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 85561 Score = 508 bits (562), Expect = 2e-139 Identities = 651/893 (73%), Gaps = 6/893 (1%) Strand=Plus/Plus Query 41315 GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATC 41374 ||||| ||||||| || ||||| ||| | | || || || || || |||||||| ||| Sbjct 125639 GCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATC 125698 Query 41375 CGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTT 41434 || ||||| || || || || | || || |||||||||||||| ||||| || || | Sbjct 125699 CGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATC 125758 Query 41435 CCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGAT 41494 || || || || || || | |||||||||||||| |||||||| ||| || ||||| Sbjct 125759 CCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGAT 125818 Query 41495 GAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTC 41554 || ||| | |||||||| ||||| | |||| | | ||| || ||||| || ||| | || Sbjct 125819 GAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTT-CTTATTAG-GT- 125875 Query 41555 TTTGC---TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGG 41611 |||| ||||||||| || || |||||| | ||||| || |||| ||| | || ||| Sbjct 125876 GTTGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGG 125935 Query 41612 ATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCG 41671 ||||| || || | ||||||||| || || || || |||| || ||| | || || || Sbjct 125936 ATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCA 125995 Query 41672 TTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTAC 41731 | || || || ||||| ||||||| |||||| || || || || || || || |||| | Sbjct 125996 ATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTC 126055 Query 41732 ATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTG 41791 ||| | || ||||| ||||| ||||| || | ||||| || || |||||| ||||| Sbjct 126056 ATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTT 126115 Query 41792 GCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCA 41851 || || ||||| ||||| ||| ||| ||||||||||||| | || || || Sbjct 126116 GCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGT 126175 Query 41852 CTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAG 41911 | || ||||| || |||||| | | ||| ||||| |||||||| || |||||||| Sbjct 126176 TTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAA 126235 Query 41912 GAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971 ||||| |||||||| || || ||||| ||||| || |||||||| | ||||||||||| Sbjct 126236 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATAC 126295 Query 41972 GCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGT 42031 ||| || || || || ||| | | || ||||| | ||| ||||| ||| ||||| Sbjct 126296 GCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGT 126355 Query 42032 ATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTT 42091 || ||||| || | | || | ||| ||||| |||||||| || ||||||||||| Sbjct 126356 ATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTC 126415 Query 42092 AACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAAC 42151 ||||||||| | | | | || | || | || || ||||| |||||||| || ||||| Sbjct 126416 AACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAAC 126475 Query 42152 CGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCC 42204 ||||| | | || | || || ||||| || || ||||| ||||||||||| Sbjct 126476 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 126528 >seq43102 Length=56976 Score = 508 bits (562), Expect = 2e-139 Identities = 649/893 (73%), Gaps = 6/893 (1%) Strand=Plus/Minus Query 41315 GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATC 41374 ||||| ||||||| || ||||| ||| | | || || || || || |||||||| ||| Sbjct 27161 GCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATC 27102 Query 41375 CGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTT 41434 || ||||| || || || || | || || |||||||||||||| ||||| || || | Sbjct 27101 CGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATC 27042 Query 41435 CCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGAT 41494 || || || || || || | |||||||||||||| |||||||| ||| || ||||| Sbjct 27041 CCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGAT 26982 Query 41495 GAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTC 41554 || ||| | |||||||| ||||| | |||| | | ||| || |||||| | | || || Sbjct 26981 GAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGT- 26923 Query 41555 TTTGC---TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGG 41611 ||| ||||||||| || || |||||| | ||||| || |||| ||| | || ||| Sbjct 26922 --TGCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGG 26865 Query 41612 ATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCG 41671 ||||| || || | ||||||||| || || || || |||| || ||| | || || || Sbjct 26864 ATCTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCA 26805 Query 41672 TTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTAC 41731 | || || || ||||| ||||||| |||||| || || || || || || || |||| | Sbjct 26804 ATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTC 26745 Query 41732 ATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTG 41791 ||| | || ||||| ||||| ||||| || | ||||| || || |||||| ||||| Sbjct 26744 ATGTTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTT 26685 Query 41792 GCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCA 41851 || || ||||| ||||| ||| ||| ||||||||||||| | || || || Sbjct 26684 GCTGGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGT 26625 Query 41852 CTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAG 41911 | || ||||| || |||||| | | ||| ||||| |||||||| || |||||||| Sbjct 26624 TTAATCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAA 26565 Query 41912 GAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971 ||||| |||||||| || || ||||| ||||| || |||||||| | ||||||||||| Sbjct 26564 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATAC 26505 Query 41972 GCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGT 42031 ||| || || || || ||| | | || ||||| | ||| ||||| ||| ||||| Sbjct 26504 GCTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGT 26445 Query 42032 ATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTT 42091 || ||||| || | | || | ||| ||||| |||||||| || ||||||||||| Sbjct 26444 ATCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTC 26385 Query 42092 AACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAAC 42151 ||||||||| | | | | || | || | || || ||||| |||||||| || ||||| Sbjct 26384 AACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAAC 26325 Query 42152 CGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCC 42204 ||||| | | || | || || ||||| || || ||||| ||||||||||| Sbjct 26324 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 26272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146126036423968