Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07-
25] 50,892 sequences; 92,185,637 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq50892 499 9e-137
seq43102 499 9e-137
>seq50892
Length=141790
Score = 499 bits (552), Expect = 9e-137
Identities = 683/952 (72%), Gaps = 4/952 (0%)
Strand=Plus/Minus
Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369
||| | |||||| | || | || ||||||||| | ||| |||| | | | |
Sbjct 86510 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACA 86451
Query 42370 GCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATT 42429
||||| | ||||| || ||||||| || || || ||||| ||||| || ||||| ||
Sbjct 86450 GCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATC 86391
Query 42430 CGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTG 42489
|||||||| || | || ||| | | || || |||||||||||||| ||||| || |
Sbjct 86390 CGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATC 86331
Query 42490 CCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGAC 42549
||||| ||||| ||||| | || || || | ||||||||||| | | ||||
Sbjct 86330 CCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGAT 86271
Query 42550 GAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATC 42609
|| ||| | ||||| || || ||||| || | |||| || |||||| | | ||| |
Sbjct 86270 GAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTT 86211
Query 42610 TTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATC 42669
|||| |||| || ||||||||| | ||||| | || ||| | || ||||||
Sbjct 86210 GCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATC 86151
Query 42670 TTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTT 42729
|| || || | |||||| || || || ||||| ||||||| ||| | || || ||| |
Sbjct 86150 TTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATC 86091
Query 42730 GGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATG 42789
|| ||||||||||| || ||||| |||||| | || || || ||||| || |||||||||
Sbjct 86090 GGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATG 86031
Query 42790 TTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC 42849
|| || ||||| |||||||| ||||| | ||||| || ||||| ||| |||||||||
Sbjct 86030 TTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCT 85971
Query 42850 GGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTT 42909
|| ||||| ||||| || || ||| |||||||| ||| | || || ||| | |
Sbjct 85970 GGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTA 85911
Query 42910 GTGCGTGAAACGACTGAAAACGAAAGCCAA--AATTATGGCTACAAGTTCGGTCAAGAGG 42967
| |||||||| |||||||||||| ||| || || || ||||| ||||||||||| |
Sbjct 85910 ATCCGTGAAACAACTGAAAACGAAT--CAACTAACTACGGTTACAAATTCGGTCAAGAAG 85853
Query 42968 AGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATG 43027
| || ||||| ||||| || || || || ||||||||||| || | ||||||||||| |
Sbjct 85852 AAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACG 85793
Query 43028 CGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGA 43087
| || || || || || |||| |||||||| | || ||||| ||| | || |
Sbjct 85792 CTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTA 85733
Query 43088 TTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTA 43147
| ||||| |||||| | || | ||||| ||||| || ||||| || ||||| ||||| |
Sbjct 85732 TCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCA 85673
Query 43148 ACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATC 43207
||||||| |||||||| ||| || ||| || || ||||||||||| | || |
Sbjct 85672 ACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACC 85613
Query 43208 GTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCC 43259
|||| | | || | || || |||||||| || || || || ||||||||
Sbjct 85612 GTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 85561
Score = 499 bits (552), Expect = 9e-137
Identities = 683/952 (72%), Gaps = 4/952 (0%)
Strand=Plus/Plus
Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369
||| | |||||| | || | || ||||||||| | ||| |||| | | | |
Sbjct 125579 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACA 125638
Query 42370 GCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATT 42429
||||| | ||||| || ||||||| || || || ||||| ||||| || ||||| ||
Sbjct 125639 GCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATC 125698
Query 42430 CGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTG 42489
|||||||| || | || ||| | | || || |||||||||||||| ||||| || |
Sbjct 125699 CGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATC 125758
Query 42490 CCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGAC 42549
||||| ||||| ||||| | || || || | ||||||||||| | | ||||
Sbjct 125759 CCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGAT 125818
Query 42550 GAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATC 42609
|| ||| | ||||| || || ||||| || | |||| || |||||| | | ||| |
Sbjct 125819 GAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTT 125878
Query 42610 TTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATC 42669
|||| |||| || ||||||||| | ||||| | || ||| | || ||||||
Sbjct 125879 GCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATC 125938
Query 42670 TTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTT 42729
|| || || | |||||| || || || ||||| ||||||| ||| | || || ||| |
Sbjct 125939 TTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATC 125998
Query 42730 GGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATG 42789
|| ||||||||||| || ||||| |||||| | || || || ||||| || |||||||||
Sbjct 125999 GGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATG 126058
Query 42790 TTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC 42849
|| || ||||| |||||||| ||||| | ||||| || ||||| ||| |||||||||
Sbjct 126059 TTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCT 126118
Query 42850 GGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTT 42909
|| ||||| ||||| || || ||| |||||||| ||| | || || ||| | |
Sbjct 126119 GGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTA 126178
Query 42910 GTGCGTGAAACGACTGAAAACGAAAGCCAA--AATTATGGCTACAAGTTCGGTCAAGAGG 42967
| |||||||| |||||||||||| ||| || || || ||||| ||||||||||| |
Sbjct 126179 ATCCGTGAAACAACTGAAAACGAA--TCAACTAACTACGGTTACAAATTCGGTCAAGAAG 126236
Query 42968 AGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATG 43027
| || ||||| ||||| || || || || ||||||||||| || | ||||||||||| |
Sbjct 126237 AAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACG 126296
Query 43028 CGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGA 43087
| || || || || || |||| |||||||| | || ||||| ||| | || |
Sbjct 126297 CTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTA 126356
Query 43088 TTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTA 43147
| ||||| |||||| | || | ||||| ||||| || ||||| || ||||| ||||| |
Sbjct 126357 TCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCA 126416
Query 43148 ACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATC 43207
||||||| |||||||| ||| || ||| || || ||||||||||| | || |
Sbjct 126417 ACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACC 126476
Query 43208 GTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCC 43259
|||| | | || | || || |||||||| || || || || ||||||||
Sbjct 126477 GTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 126528
>seq43102
Length=56976
Score = 499 bits (552), Expect = 9e-137
Identities = 683/952 (72%), Gaps = 4/952 (0%)
Strand=Plus/Minus
Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369
||| | |||||| | || | || ||||||||| | ||| |||| | | | |
Sbjct 27221 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACA 27162
Query 42370 GCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATT 42429
||||| | ||||| || ||||||| || || || ||||| ||||| || ||||| ||
Sbjct 27161 GCTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATC 27102
Query 42430 CGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTG 42489
|||||||| || | || ||| | | || || |||||||||||||| ||||| || |
Sbjct 27101 CGTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATC 27042
Query 42490 CCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGAC 42549
||||| ||||| ||||| | || || || | ||||||||||| | | ||||
Sbjct 27041 CCTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGAT 26982
Query 42550 GAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATC 42609
|| ||| | ||||| || || ||||| || | |||| || |||||| | | ||| |
Sbjct 26981 GAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTT 26922
Query 42610 TTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATC 42669
|||| |||| || ||||||||| | ||||| | || ||| | || ||||||
Sbjct 26921 GCAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATC 26862
Query 42670 TTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTT 42729
|| || || | |||||| || || || ||||| ||||||| ||| | || || ||| |
Sbjct 26861 TTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATC 26802
Query 42730 GGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATG 42789
|| ||||||||||| || ||||| |||||| | || || || ||||| || |||||||||
Sbjct 26801 GGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATG 26742
Query 42790 TTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCC 42849
|| || ||||| |||||||| ||||| | ||||| || ||||| ||| |||||||||
Sbjct 26741 TTAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCT 26682
Query 42850 GGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTT 42909
|| ||||| ||||| || || ||| |||||||| ||| | || || ||| | |
Sbjct 26681 GGTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTA 26622
Query 42910 GTGCGTGAAACGACTGAAAACGAAAGCCAA--AATTATGGCTACAAGTTCGGTCAAGAGG 42967
| |||||||| |||||||||||| ||| || || || ||||| ||||||||||| |
Sbjct 26621 ATCCGTGAAACAACTGAAAACGAAT--CAACTAACTACGGTTACAAATTCGGTCAAGAAG 26564
Query 42968 AGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATG 43027
| || ||||| ||||| || || || || ||||||||||| || | ||||||||||| |
Sbjct 26563 AAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACG 26504
Query 43028 CGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGA 43087
| || || || || || |||| |||||||| | || ||||| ||| | || |
Sbjct 26503 CTTCATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTA 26444
Query 43088 TTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTA 43147
| ||||| |||||| | || | ||||| ||||| || ||||| || ||||| ||||| |
Sbjct 26443 TCTGGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCA 26384
Query 43148 ACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATC 43207
||||||| |||||||| ||| || ||| || || ||||||||||| | || |
Sbjct 26383 ACCAATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACC 26324
Query 43208 GTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCC 43259
|||| | | || | || || |||||||| || || || || ||||||||
Sbjct 26323 GTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 26272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143446057028816
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