Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq50892 518 1e-142 seq43102 518 1e-142 >seq50892 Length=141790 Score = 518 bits (574), Expect = 1e-142 Identities = 739/1032 (72%), Gaps = 6/1032 (1%) Strand=Plus/Plus Query 25840 TGGGGCTGATAGTGCAACTTGTGTTGACTCAGATGATGCTAAGTCAAGTGGAAAGTTATG 25899 ||| |||| | |||||| || | ||| ||| ||||| || | ||| ||||| || Sbjct 85512 TGGAGCTGTGAAAGCAACTGGTAATACATCACCTGAAGCTAAATCTAATGGGAAGTTGTG 85571 Query 25900 AGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCA 25959 || ||||| |||||||| ||||| | || | | ||| ||||| | | ||||||||| Sbjct 85572 CGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATGATATCAGCCCA 85631 Query 25960 TGTAGGTATTATCTTTCCATTAACA-TCTACTACTGACTGGTTAAAGTTAAAACCATTTA 26018 ||| | || || | | || | | || || || || ||||| ||||| ||||| |||| Sbjct 85632 TGT-GTTAATAACACGACCTTGAGAATCAACAACAGATTGGTTGAAGTTGAAACCGTTTA 85690 Query 26019 GGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAG 26078 ||| ||||||||||| | ||||||||||| || | ||| || || | ||| ||||| Sbjct 85691 AGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCTAAAACTGGCCATA 85750 Query 26079 TAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATC 26138 ||| | ||||| || | || ||| ||| || || || || || || ||||| | Sbjct 85751 AAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTATTGGAAGATTAAAC 85810 Query 26139 TCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTAT 26198 |||||||| ||||||||||| || || || || || ||||| ||||| || || || | Sbjct 85811 GACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGT 85870 Query 26199 AGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT-GCAATAAGTGAGGAAGTAACCAAA 26257 | || || || ||| | | || || ||||| | | ||| || |||| || || Sbjct 85871 AACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTAG-AAGTTACTAAT 85929 Query 26258 CTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGG 26317 |||||||||||| ||| | || |||||||| || ||||||||||||||||| ||| Sbjct 85930 GAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACACCAGCCATGTGG 85989 Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 ||||||||||| | || || ||||| ||||||||||| ||||| ||||||||||||||| Sbjct 85990 AATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAGTTAAAAGTACCA 86049 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 |||||||| | |||||| |||||| ||| ||||| |||| || || |||||||| Sbjct 86050 GAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTATACTAAGAAT 86109 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCT 26497 ||||| |||||| | || ||| || | |||| || || ||||| || | ||| ||| Sbjct 86110 ACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAAGGACGCATACCT 86169 Query 26498 AGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGG 26557 | | ||| || |||||| | | || || ||| || |||| ||||||||| Sbjct 86170 AAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAACACCTAATAAGAAGTGT 86229 Query 26558 AAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCC 26617 || | || | ||| || || || || ||||||| |||||| || | || | |||||| Sbjct 86230 AAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACTGAAGCTGCTTCC 86289 Query 26618 CAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATT 26677 ||||| ||||| || || | || || ||||| || |||| ||||| ||||| || Sbjct 86290 CAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACTGCACCTGAGATG 86349 Query 26678 ATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACA 26737 || ||||| ||||| | ||| || || | ||||| ||||| || ||||| |||||||| Sbjct 86350 ATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCATCGATATCTACT 86409 Query 26738 GGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATC 26797 || || |||||||| || || | || ||||| | ||| |||| | ||| | || | | Sbjct 86410 GGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGCTGTTAATAATAAAGGAAAC 86469 Query 26798 A-TAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856 | ||| || || ||||| || | || | |||||| ||||||||||||| ||| | || Sbjct 86470 ATTAAACA-ACCAAACCAACCGATGTATAAACGGTTTTCAGTACTTGTAATCCAAGCGCA 86528 Query 26857 AAACCTCTCCCA 26868 || | |||||| Sbjct 86529 GAAGCGCTCCCA 86540 Score = 518 bits (574), Expect = 1e-142 Identities = 739/1032 (72%), Gaps = 6/1032 (1%) Strand=Plus/Minus Query 25840 TGGGGCTGATAGTGCAACTTGTGTTGACTCAGATGATGCTAAGTCAAGTGGAAAGTTATG 25899 ||| |||| | |||||| || | ||| ||| ||||| || | ||| ||||| || Sbjct 126577 TGGAGCTGTGAAAGCAACTGGTAATACATCACCTGAAGCTAAATCTAATGGGAAGTTGTG 126518 Query 25900 AGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCA 25959 || ||||| |||||||| ||||| | || | | ||| ||||| | | ||||||||| Sbjct 126517 CGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATGATATCAGCCCA 126458 Query 25960 TGTAGGTATTATCTTTCCATTAACA-TCTACTACTGACTGGTTAAAGTTAAAACCATTTA 26018 ||| | || || | | || | | || || || || ||||| ||||| ||||| |||| Sbjct 126457 TGT-GTTAATAACACGACCTTGAGAATCAACAACAGATTGGTTGAAGTTGAAACCGTTTA 126399 Query 26019 GGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAG 26078 ||| ||||||||||| | ||||||||||| || | ||| || || | ||| ||||| Sbjct 126398 AGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCTAAAACTGGCCATA 126339 Query 26079 TAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATC 26138 ||| | ||||| || | || ||| ||| || || || || || || ||||| | Sbjct 126338 AAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTATTGGAAGATTAAAC 126279 Query 26139 TCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTAT 26198 |||||||| ||||||||||| || || || || || ||||| ||||| || || || | Sbjct 126278 GACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGT 126219 Query 26199 AGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT-GCAATAAGTGAGGAAGTAACCAAA 26257 | || || || ||| | | || || ||||| | | ||| || |||| || || Sbjct 126218 AACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTAG-AAGTTACTAAT 126160 Query 26258 CTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGG 26317 |||||||||||| ||| | || |||||||| || ||||||||||||||||| ||| Sbjct 126159 GAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACACCAGCCATGTGG 126100 Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 ||||||||||| | || || ||||| ||||||||||| ||||| ||||||||||||||| Sbjct 126099 AATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAGTTAAAAGTACCA 126040 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 |||||||| | |||||| |||||| ||| ||||| |||| || || |||||||| Sbjct 126039 GAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTATACTAAGAAT 125980 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCT 26497 ||||| |||||| | || ||| || | |||| || || ||||| || | ||| ||| Sbjct 125979 ACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAAGGACGCATACCT 125920 Query 26498 AGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGG 26557 | | ||| || |||||| | | || || ||| || |||| ||||||||| Sbjct 125919 AAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAACACCTAATAAGAAGTGT 125860 Query 26558 AAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCC 26617 || | || | ||| || || || || ||||||| |||||| || | || | |||||| Sbjct 125859 AAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACTGAAGCTGCTTCC 125800 Query 26618 CAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATT 26677 ||||| ||||| || || | || || ||||| || |||| ||||| ||||| || Sbjct 125799 CAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACTGCACCTGAGATG 125740 Query 26678 ATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACA 26737 || ||||| ||||| | ||| || || | ||||| ||||| || ||||| |||||||| Sbjct 125739 ATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCATCGATATCTACT 125680 Query 26738 GGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATC 26797 || || |||||||| || || | || ||||| | ||| |||| | ||| | || | | Sbjct 125679 GGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGCTGTTAATAATAAAGGAAAC 125620 Query 26798 A-TAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856 | ||| || || ||||| || | || | |||||| ||||||||||||| ||| | || Sbjct 125619 ATTAAACA-ACCAAACCAACCGATGTATAAACGGTTTTCAGTACTTGTAATCCAAGCGCA 125561 Query 26857 AAACCTCTCCCA 26868 || | |||||| Sbjct 125560 GAAGCGCTCCCA 125549 >seq43102 Length=56976 Score = 518 bits (574), Expect = 1e-142 Identities = 739/1032 (72%), Gaps = 6/1032 (1%) Strand=Plus/Plus Query 25840 TGGGGCTGATAGTGCAACTTGTGTTGACTCAGATGATGCTAAGTCAAGTGGAAAGTTATG 25899 ||| |||| | |||||| || | ||| ||| ||||| || | ||| ||||| || Sbjct 26223 TGGAGCTGTGAAAGCAACTGGTAATACATCACCTGAAGCTAAATCTAATGGGAAGTTGTG 26282 Query 25900 AGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCA 25959 || ||||| |||||||| ||||| | || | | ||| ||||| | | ||||||||| Sbjct 26283 CGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATGATATCAGCCCA 26342 Query 25960 TGTAGGTATTATCTTTCCATTAACA-TCTACTACTGACTGGTTAAAGTTAAAACCATTTA 26018 ||| | || || | | || | | || || || || ||||| ||||| ||||| |||| Sbjct 26343 TGT-GTTAATAACACGACCTTGAGAATCAACAACAGATTGGTTGAAGTTGAAACCGTTTA 26401 Query 26019 GGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAG 26078 ||| ||||||||||| | ||||||||||| || | ||| || || | ||| ||||| Sbjct 26402 AGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCTAAAACTGGCCATA 26461 Query 26079 TAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATC 26138 ||| | ||||| || | || ||| ||| || || || || || || ||||| | Sbjct 26462 AAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTATTGGAAGATTAAAC 26521 Query 26139 TCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTAT 26198 |||||||| ||||||||||| || || || || || ||||| ||||| || || || | Sbjct 26522 GACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGT 26581 Query 26199 AGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT-GCAATAAGTGAGGAAGTAACCAAA 26257 | || || || ||| | | || || ||||| | | ||| || |||| || || Sbjct 26582 AACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTAG-AAGTTACTAAT 26640 Query 26258 CTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGG 26317 |||||||||||| ||| | || |||||||| || ||||||||||||||||| ||| Sbjct 26641 GAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACACCAGCCATGTGG 26700 Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 ||||||||||| | || || ||||| ||||||||||| ||||| ||||||||||||||| Sbjct 26701 AATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAGTTAAAAGTACCA 26760 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 |||||||| | |||||| |||||| ||| ||||| |||| || || |||||||| Sbjct 26761 GAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGGTATACTAAGAAT 26820 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCT 26497 ||||| |||||| | || ||| || | |||| || || ||||| || | ||| ||| Sbjct 26821 ACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAAGGACGCATACCT 26880 Query 26498 AGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGG 26557 | | ||| || |||||| | | || || ||| || |||| ||||||||| Sbjct 26881 AAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAACACCTAATAAGAAGTGT 26940 Query 26558 AAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCC 26617 || | || | ||| || || || || ||||||| |||||| || | || | |||||| Sbjct 26941 AAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACTGAAGCTGCTTCC 27000 Query 26618 CAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATT 26677 ||||| ||||| || || | || || ||||| || |||| ||||| ||||| || Sbjct 27001 CAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACTGCACCTGAGATG 27060 Query 26678 ATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACA 26737 || ||||| ||||| | ||| || || | ||||| ||||| || ||||| |||||||| Sbjct 27061 ATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCATCGATATCTACT 27120 Query 26738 GGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATC 26797 || || |||||||| || || | || ||||| | ||| |||| | ||| | || | | Sbjct 27121 GGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGCTGTTAATAATAAAGGAAAC 27180 Query 26798 A-TAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACA 26856 | ||| || || ||||| || | || | |||||| ||||||||||||| ||| | || Sbjct 27181 ATTAAACA-ACCAAACCAACCGATGTATAAACGGTTTTCAGTACTTGTAATCCAAGCGCA 27239 Query 26857 AAACCTCTCCCA 26868 || | |||||| Sbjct 27240 GAAGCGCTCCCA 27251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147622731360640