Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq50892 742 0.0 seq43102 742 0.0 >seq50892 Length=141790 Score = 742 bits (822), Expect = 0.0 Identities = 734/949 (77%), Gaps = 0/949 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || |||||||||| ||| | | ||| | |||| | | | | Sbjct 86509 CTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAG 86450 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 || || | || ||||| |||| || || || || ||||| ||||| || |||||||| | Sbjct 86449 CTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCC 86390 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || || ||||||||| | || ||||||||||||||||| ||||| ||| ||| Sbjct 86389 GTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCC 86330 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||||||||||||| |||||| | |||||||| || || ||||||||||| | |||||| Sbjct 86329 CTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATG 86270 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 ||||||| ||||| |||||||||| |||| | | || || |||||| | | || | Sbjct 86269 AGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTG 86210 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 || ||| |||||| | |||||| | |||||| | || |||||||||||||||| Sbjct 86209 CAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCT 86150 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 || |||| |||||| |||||| | || || | || |||||| | || || || ||| Sbjct 86149 TCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCG 86090 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||| Sbjct 86089 GTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGT 86030 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || |||||||| |||||||| ||| | |||||||| ||||||||| ||| || || | Sbjct 86029 TAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTG 85970 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| |||||||| ||| | ||| |||||||||||||||||| || || ||| ||| Sbjct 85969 GTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAA 85910 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 |||||||||| ||||| | || || ||||| |||||||| ||||| |||||||||| Sbjct 85909 TCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAG 85850 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 ||||||| ||||| || ||||| || || ||||| |||||| | |||||||| || || | Sbjct 85849 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 85790 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 | |||||||||||| | | | ||||||||| | ||| |||||| || | | |||| Sbjct 85789 CATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCT 85730 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||| |||||||| | || |||||||||||| | ||||||||||||||||||| Sbjct 85729 GGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACC 85670 Query 155831 AGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCG 155890 | ||||| || || || ||| || || |||||||| || || ||||||| | Sbjct 85669 AATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTG 85610 Query 155891 CTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 155939 ||| | | |||||||||||||||||||| |||||||| ||||||||||| Sbjct 85609 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 85561 Score = 742 bits (822), Expect = 0.0 Identities = 734/949 (77%), Gaps = 0/949 (0%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || |||||||||| ||| | | ||| | |||| | | | | Sbjct 125580 CTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAG 125639 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 || || | || ||||| |||| || || || || ||||| ||||| || |||||||| | Sbjct 125640 CTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCC 125699 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || || ||||||||| | || ||||||||||||||||| ||||| ||| ||| Sbjct 125700 GTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCC 125759 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||||||||||||| |||||| | |||||||| || || ||||||||||| | |||||| Sbjct 125760 CTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATG 125819 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 ||||||| ||||| |||||||||| |||| | | || || |||||| | | || | Sbjct 125820 AGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTG 125879 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 || ||| |||||| | |||||| | |||||| | || |||||||||||||||| Sbjct 125880 CAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCT 125939 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 || |||| |||||| |||||| | || || | || |||||| | || || || ||| Sbjct 125940 TCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCG 125999 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||| Sbjct 126000 GTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGT 126059 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || |||||||| |||||||| ||| | |||||||| ||||||||| ||| || || | Sbjct 126060 TAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTG 126119 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| |||||||| ||| | ||| |||||||||||||||||| || || ||| ||| Sbjct 126120 GTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAA 126179 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 |||||||||| ||||| | || || ||||| |||||||| ||||| |||||||||| Sbjct 126180 TCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAG 126239 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 ||||||| ||||| || ||||| || || ||||| |||||| | |||||||| || || | Sbjct 126240 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 126299 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 | |||||||||||| | | | ||||||||| | ||| |||||| || | | |||| Sbjct 126300 CATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCT 126359 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||| |||||||| | || |||||||||||| | ||||||||||||||||||| Sbjct 126360 GGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACC 126419 Query 155831 AGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCG 155890 | ||||| || || || ||| || || |||||||| || || ||||||| | Sbjct 126420 AATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTG 126479 Query 155891 CTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 155939 ||| | | |||||||||||||||||||| |||||||| ||||||||||| Sbjct 126480 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 126528 >seq43102 Length=56976 Score = 742 bits (822), Expect = 0.0 Identities = 734/949 (77%), Gaps = 0/949 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || |||||||||| ||| | | ||| | |||| | | | | Sbjct 27220 CTGAAAACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTTCCTTTATTATTAACAG 27161 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 || || | || ||||| |||| || || || || ||||| ||||| || |||||||| | Sbjct 27160 CTACTTCTTGTTTCATCATCGCTTTTATCGCAGCTCCTCCAGTAGATATCGATGGTATCC 27101 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || || ||||||||| | || ||||||||||||||||| ||||| ||| ||| Sbjct 27100 GTGAACCAGTAGCAGGTTCTTTATTATACGGTAACAACATCATCTCAGGTGCAGTTATCC 27041 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||||||||||||| |||||| | |||||||| || || ||||||||||| | |||||| Sbjct 27040 CTAGTTCAAACGCTATTGGTATGCACTTCTACCCAATCTGGGAAGCAGCTTCAGTTGATG 26981 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 ||||||| ||||| |||||||||| |||| | | || || |||||| | | || | Sbjct 26980 AGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTTACACTTCTTATTAGGTGTTG 26921 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 || ||| |||||| | |||||| | |||||| | || |||||||||||||||| Sbjct 26920 CAAGTTACATGGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGTCCTTGGATCT 26861 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 || |||| |||||| |||||| | || || | || |||||| | || || || ||| Sbjct 26860 TCGTAGCATTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATCG 26801 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||| Sbjct 26800 GTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTTAACTTCATGT 26741 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || |||||||| |||||||| ||| | |||||||| ||||||||| ||| || || | Sbjct 26740 TAGTATTCCAAGCTGAACACAACATCTTAATGCACCCATTCCACATGGCTGGTGTTGCTG 26681 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| |||||||| ||| | ||| |||||||||||||||||| || || ||| ||| Sbjct 26680 GTGTATTCGGTGGTTCTTTATTCAGTGCTATGCACGGTTCATTAGTAACTTCTAGTTTAA 26621 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 |||||||||| ||||| | || || ||||| |||||||| ||||| |||||||||| Sbjct 26620 TCCGTGAAACAACTGAAAACGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAG 26561 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 ||||||| ||||| || ||||| || || ||||| |||||| | |||||||| || || | Sbjct 26560 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 26501 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 | |||||||||||| | | | ||||||||| | ||| |||||| || | | |||| Sbjct 26500 CATTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCT 26441 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||| |||||||| | || |||||||||||| | ||||||||||||||||||| Sbjct 26440 GGTTAACTTCTATGGGTATTAGTACAATGGCATTCAACTTAAACGGTTTCAACTTCAACC 26381 Query 155831 AGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCG 155890 | ||||| || || || ||| || || |||||||| || || ||||||| | Sbjct 26380 AATCTGTTGTTGATTCTCAAGGTCGTGTTATTAACACATGGGCTGATATCATTAACCGTG 26321 Query 155891 CTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 155939 ||| | | |||||||||||||||||||| |||||||| ||||||||||| Sbjct 26320 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 26272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584463157087520