Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq50892 643 3e-180 seq43102 643 3e-180 >seq50892 Length=141790 Score = 643 bits (712), Expect = 3e-180 Identities = 738/987 (75%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | |||||||| |||| || |||||||| |||||||| |||||||||||||||||| Sbjct 85540 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 85599 Query 40584 CCTAGACTCTG-TCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 |||| | || | | ||||| | ||||||||| || ||| || ||| | || || Sbjct 85600 CCTA-AATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATC 85658 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 || || || ||||| ||||| ||||| || | ||| || ||||| ||| |||||||| Sbjct 85659 AACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCAT 85718 Query 40703 GGAGGTAAGCCATATGCCAATAACCGG---GAAAGCACCAAGAAAGAAGTGTAGCGCACG 40759 || || | ||| || || | ||| || |||| | ||| |||||||||| ||||| Sbjct 85719 AGAAGTTAACCAGATACCTAAAACTGGCCATAAAG--CTAAG-AAGAAGTGTAAAGCACG 85775 Query 40760 GCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTAC 40819 |||||||||||||| ||||| || |||| | |||||||||||||||||||||||| Sbjct 85776 TGAGTTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTAC 85835 Query 40820 GATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTC 40879 |||||| ||||| || |||| ||||| || || || |||||||| |||||| |||| Sbjct 85836 GATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTC 85895 Query 40880 CGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGC 40939 || || || || || | ||||| || | |||||||||||| || |||| Sbjct 85896 AGTTGTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGA 85955 Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 |||||| || || || ||||| || ||| |||||||||||||| | ||||||||||| Sbjct 85956 ACCACCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTC 86015 Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 |||||||| || ||||||||||| || || ||| ||| |||||||||||||||||||| Sbjct 86016 AGCTTGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGA 86075 Query 41060 GAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGC 41119 ||||||||| ||||||| ||| || ||||||||||| || |||||||| | |||||| Sbjct 86076 GAAAGAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGC 86135 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 | | |||| || || ||||| || | |||||||| | ||| | |||||| | | Sbjct 86136 AGAGAATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACG 86195 Query 41180 ACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC 41239 ||| ||| ||| || |||| ||| ||||| || || || | ||| || || || || Sbjct 86196 ACCCATGTAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACC 86255 Query 41240 GTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 |||||||| |||||| || | || | |||||||||||||||||||| || | || || Sbjct 86256 GTTGTATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAAT 86315 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 ||||| || || || | || || || || || || ||||| ||||| | ||| || || Sbjct 86316 AGCGTTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACC 86375 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 | || || ||||| || ||||| |||||||| || || ||||||||||| ||||| || Sbjct 86376 TGCTACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGAT 86435 Query 41420 GAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 |||||| | ||||| |||| |||| |||| ||||| |||||||||||| | ||| Sbjct 86436 GAAACAAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTA 86495 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCA 41506 || ||||| || || || || | ||| Sbjct 86496 TAAACGGTTTTCAGTACTTGTAATCCA 86522 Score = 643 bits (712), Expect = 3e-180 Identities = 738/987 (75%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | |||||||| |||| || |||||||| |||||||| |||||||||||||||||| Sbjct 126549 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 126490 Query 40584 CCTAGACTCTGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 |||| | || | | ||||| | ||||||||| || ||| || ||| | || || Sbjct 126489 CCTAAA-TCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATC 126431 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 || || || ||||| ||||| ||||| || | ||| || ||||| ||| |||||||| Sbjct 126430 AACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCAT 126371 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGG---AAAGCACCAAGAAAGAAGTGTAGCGCACG 40759 || || | ||| || || | ||| || ||||| ||||| |||||||| ||||| Sbjct 126370 AGAAGTTAACCAGATACCTAAAACTGGCCATAAAGCT--AAGAA-GAAGTGTAAAGCACG 126314 Query 40760 GCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTAC 40819 |||||||||||||| ||||| || |||| | |||||||||||||||||||||||| Sbjct 126313 TGAGTTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTAC 126254 Query 40820 GATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTC 40879 |||||| ||||| || |||| ||||| || || || |||||||| |||||| |||| Sbjct 126253 GATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTC 126194 Query 40880 CGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGC 40939 || || || || || | ||||| || | |||||||||||| || |||| Sbjct 126193 AGTTGTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGA 126134 Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 |||||| || || || ||||| || ||| |||||||||||||| | ||||||||||| Sbjct 126133 ACCACCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTC 126074 Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 |||||||| || ||||||||||| || || ||| ||| |||||||||||||||||||| Sbjct 126073 AGCTTGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGA 126014 Query 41060 GAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGC 41119 ||||||||| ||||||| ||| || ||||||||||| || |||||||| | |||||| Sbjct 126013 GAAAGAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGC 125954 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 | | |||| || || ||||| || | |||||||| | ||| | |||||| | | Sbjct 125953 AGAGAATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACG 125894 Query 41180 ACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC 41239 ||| ||| ||| || |||| ||| ||||| || || || | ||| || || || || Sbjct 125893 ACCCATGTAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACC 125834 Query 41240 GTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 |||||||| |||||| || | || | |||||||||||||||||||| || | || || Sbjct 125833 GTTGTATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAAT 125774 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 ||||| || || || | || || || || || || ||||| ||||| | ||| || || Sbjct 125773 AGCGTTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACC 125714 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 | || || ||||| || ||||| |||||||| || || ||||||||||| ||||| || Sbjct 125713 TGCTACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGAT 125654 Query 41420 GAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 |||||| | ||||| |||| |||| |||| ||||| |||||||||||| | ||| Sbjct 125653 GAAACAAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTA 125594 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCA 41506 || ||||| || || || || | ||| Sbjct 125593 TAAACGGTTTTCAGTACTTGTAATCCA 125567 >seq43102 Length=56976 Score = 643 bits (712), Expect = 3e-180 Identities = 738/987 (75%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | |||||||| |||| || |||||||| |||||||| |||||||||||||||||| Sbjct 26251 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 26310 Query 40584 CCTAGACTCTG-TCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 |||| | || | | ||||| | ||||||||| || ||| || ||| | || || Sbjct 26311 CCTA-AATCAGCACGGTTAATGATATCAGCCCATGTGTTAATAACACGACCTTGAGAATC 26369 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 || || || ||||| ||||| ||||| || | ||| || ||||| ||| |||||||| Sbjct 26370 AACAACAGATTGGTTGAAGTTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCAT 26429 Query 40703 GGAGGTAAGCCATATGCCAATAACCGG---GAAAGCACCAAGAAAGAAGTGTAGCGCACG 40759 || || | ||| || || | ||| || |||| | ||| |||||||||| ||||| Sbjct 26430 AGAAGTTAACCAGATACCTAAAACTGGCCATAAAG--CTAAG-AAGAAGTGTAAAGCACG 26486 Query 40760 GCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTAC 40819 |||||||||||||| ||||| || |||| | |||||||||||||||||||||||| Sbjct 26487 TGAGTTGTTGAATGAAGCGTATTGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTAC 26546 Query 40820 GATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTC 40879 |||||| ||||| || |||| ||||| || || || |||||||| |||||| |||| Sbjct 26547 GATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTC 26606 Query 40880 CGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGC 40939 || || || || || | ||||| || | |||||||||||| || |||| Sbjct 26607 AGTTGTTTCACGGATTAAACTAGAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGA 26666 Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 |||||| || || || ||||| || ||| |||||||||||||| | ||||||||||| Sbjct 26667 ACCACCGAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTC 26726 Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 |||||||| || ||||||||||| || || ||| ||| |||||||||||||||||||| Sbjct 26727 AGCTTGGAATACTAACATGAAGTTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGA 26786 Query 41060 GAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGC 41119 ||||||||| ||||||| ||| || ||||||||||| || |||||||| | |||||| Sbjct 26787 GAAAGAACCTTGACCGATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGC 26846 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 | | |||| || || ||||| || | |||||||| | ||| | |||||| | | Sbjct 26847 AGAGAATGCTACGAAGATCCAAGGACGCATACCTAAACGGTAGCTTAATTCCCATTCACG 26906 Query 41180 ACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC 41239 ||| ||| ||| || |||| ||| ||||| || || || | ||| || || || || Sbjct 26907 ACCCATGTAACTTGCAACACCTAATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACC 26966 Query 41240 GTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 |||||||| |||||| || | || | |||||||||||||||||||| || | || || Sbjct 26967 GTTGTATAACCACTCATCAACTGAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAAT 27026 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 ||||| || || || | || || || || || || ||||| ||||| | ||| || || Sbjct 27027 AGCGTTTGAACTAGGGATAACTGCACCTGAGATGATGTTGTTACCGTATAATAAAGAACC 27086 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 | || || ||||| || ||||| |||||||| || || ||||||||||| ||||| || Sbjct 27087 TGCTACTGGTTCACGGATACCATCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGAT 27146 Query 41420 GAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 |||||| | ||||| |||| |||| |||| ||||| |||||||||||| | ||| Sbjct 27147 GAAACAAGAAGTAGCTGTTAATAATAAAGGAAACATTAAACAACCAAACCAACCGATGTA 27206 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCA 41506 || ||||| || || || || | ||| Sbjct 27207 TAAACGGTTTTCAGTACTTGTAATCCA 27233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143615554532328