Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq50892 717 0.0 seq43102 717 0.0 >seq50892 Length=141790 Score = 717 bits (794), Expect = 0.0 Identities = 719/932 (77%), Gaps = 6/932 (1%) Strand=Plus/Plus Query 67374 GGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGG 67433 ||||||||||| |||||||| |||||||| |||||||| || | | || | ||||| | Sbjct 85561 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATG 85620 Query 67434 ATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACGACGGATTGGTTGAAG 67490 || || ||||| || ||| || || |||| | ||||| || |||||||||||| Sbjct 85621 ATATCAGCCCATGTGTTAATAAC---ACGACCTTGAGAATCAACAACAGATTGGTTGAAG 85677 Query 67491 TTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAG 67550 ||||||||||| | |||||||||||| || | |||||| | ||| |||||||| | Sbjct 85678 TTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCT 85737 Query 67551 ACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATAC 67610 | || || || ||| | ||||||||| | | | |||||||||||| || || || Sbjct 85738 AAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTAT 85797 Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 |||||||| || ||||| ||||| || || ||||| || ||||||||||| ||||||||| Sbjct 85798 TGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCT 85857 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || ||||| |||||||||||||| ||| || | ||||| ||||| | ||| | | | Sbjct 85858 TGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTA 85917 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 ||||| || | ||||||||||||||||| || | ||||||||||||||||| || || Sbjct 85918 GAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACA 85977 Query 67791 CCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAG 67850 ||| ||| |||||||||||||| | ||||||||| || |||||||| || |||||| || Sbjct 85978 CCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAG 86037 Query 67851 TTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGA 67910 |||||||||||||| ||||| | |||||| | |||||||||||||||||||||| || Sbjct 86038 TTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGG 86097 Query 67911 TAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAA 67970 || || ||||| || || | ||||| | |||||||||||| ||||||| |||||||| Sbjct 86098 TATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAA 86157 Query 67971 GGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCG 68030 ||||||||||| | |||||| | |||||| | |||||| ||| || | || Sbjct 86158 GGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAACACCT 86217 Query 68031 ATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGA 68090 | | |||||| || || | | |||| |||| ||||| || || ||||||||||| | Sbjct 86218 AATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACT 86277 Query 68091 GTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACA 68150 | |||||||||||||| || |||||||| | ||| || |||||||||||||| | ||| Sbjct 86278 GAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACT 86337 Query 68151 GCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCA 68210 ||||| || ||||||||||||||||| | | |||||||| || ||||| | ||||||| Sbjct 86338 GCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCA 86397 Query 68211 TCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGC 68270 |||||||| |||||||| ||||| || || || |||||||| |||| | |||| | Sbjct 86398 TCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGCTGTTAAT 86457 Query 68271 AAGCAAGGAATCATCAACACACCGAACCAACC 68302 || |||||| ||| || ||| |||||||| Sbjct 86458 AATAAAGGAAACATTAAACAACCAAACCAACC 86489 Score = 717 bits (794), Expect = 0.0 Identities = 719/932 (77%), Gaps = 6/932 (1%) Strand=Plus/Minus Query 67374 GGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGG 67433 ||||||||||| |||||||| |||||||| |||||||| || | | || | ||||| | Sbjct 126528 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATG 126469 Query 67434 ATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACGACGGATTGGTTGAAG 67490 || || ||||| || ||| || || |||| | ||||| || |||||||||||| Sbjct 126468 ATATCAGCCCATGTGTTAATAAC---ACGACCTTGAGAATCAACAACAGATTGGTTGAAG 126412 Query 67491 TTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAG 67550 ||||||||||| | |||||||||||| || | |||||| | ||| |||||||| | Sbjct 126411 TTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCT 126352 Query 67551 ACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATAC 67610 | || || || ||| | ||||||||| | | | |||||||||||| || || || Sbjct 126351 AAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTAT 126292 Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 |||||||| || ||||| ||||| || || ||||| || ||||||||||| ||||||||| Sbjct 126291 TGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCT 126232 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || ||||| |||||||||||||| ||| || | ||||| ||||| | ||| | | | Sbjct 126231 TGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTA 126172 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 ||||| || | ||||||||||||||||| || | ||||||||||||||||| || || Sbjct 126171 GAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACA 126112 Query 67791 CCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAG 67850 ||| ||| |||||||||||||| | ||||||||| || |||||||| || |||||| || Sbjct 126111 CCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAG 126052 Query 67851 TTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGA 67910 |||||||||||||| ||||| | |||||| | |||||||||||||||||||||| || Sbjct 126051 TTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGG 125992 Query 67911 TAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAA 67970 || || ||||| || || | ||||| | |||||||||||| ||||||| |||||||| Sbjct 125991 TATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAA 125932 Query 67971 GGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCG 68030 ||||||||||| | |||||| | |||||| | |||||| ||| || | || Sbjct 125931 GGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAACACCT 125872 Query 68031 ATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGA 68090 | | |||||| || || | | |||| |||| ||||| || || ||||||||||| | Sbjct 125871 AATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACT 125812 Query 68091 GTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACA 68150 | |||||||||||||| || |||||||| | ||| || |||||||||||||| | ||| Sbjct 125811 GAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACT 125752 Query 68151 GCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCA 68210 ||||| || ||||||||||||||||| | | |||||||| || ||||| | ||||||| Sbjct 125751 GCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCA 125692 Query 68211 TCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGC 68270 |||||||| |||||||| ||||| || || || |||||||| |||| | |||| | Sbjct 125691 TCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGCTGTTAAT 125632 Query 68271 AAGCAAGGAATCATCAACACACCGAACCAACC 68302 || |||||| ||| || ||| |||||||| Sbjct 125631 AATAAAGGAAACATTAAACAACCAAACCAACC 125600 >seq43102 Length=56976 Score = 717 bits (794), Expect = 0.0 Identities = 719/932 (77%), Gaps = 6/932 (1%) Strand=Plus/Plus Query 67374 GGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGG 67433 ||||||||||| |||||||| |||||||| |||||||| || | | || | ||||| | Sbjct 26272 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAATG 26331 Query 67434 ATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAACGACGGATTGGTTGAAG 67490 || || ||||| || ||| || || |||| | ||||| || |||||||||||| Sbjct 26332 ATATCAGCCCATGTGTTAATAAC---ACGACCTTGAGAATCAACAACAGATTGGTTGAAG 26388 Query 67491 TTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAG 67550 ||||||||||| | |||||||||||| || | |||||| | ||| |||||||| | Sbjct 26389 TTGAAACCGTTTAAGTTGAATGCCATTGTACTAATACCCATAGAAGTTAACCAGATACCT 26448 Query 67551 ACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATAC 67610 | || || || ||| | ||||||||| | | | |||||||||||| || || || Sbjct 26449 AAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAATGAAGCGTAT 26508 Query 67611 TGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCT 67670 |||||||| || ||||| ||||| || || ||||| || ||||||||||| ||||||||| Sbjct 26509 TGGAAGATTAAACGACCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCT 26568 Query 67671 TGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAA 67730 || ||||| |||||||||||||| ||| || | ||||| ||||| | ||| | | | Sbjct 26569 TGACCGAATTTGTAACCGTAGTTAGTTGATTCGTTTTCAGTTGTTTCACGGATTAAACTA 26628 Query 67731 GAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACT 67790 ||||| || | ||||||||||||||||| || | ||||||||||||||||| || || Sbjct 26629 GAAGTTACTAATGAACCGTGCATAGCACTGAATAAAGAACCACCGAATACACCAGCAACA 26688 Query 67791 CCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAG 67850 ||| ||| |||||||||||||| | ||||||||| || |||||||| || |||||| || Sbjct 26689 CCAGCCATGTGGAATGGGTGCATTAAGATGTTGTGTTCAGCTTGGAATACTAACATGAAG 26748 Query 67851 TTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGA 67910 |||||||||||||| ||||| | |||||| | |||||||||||||||||||||| || Sbjct 26749 TTAAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAAGAACCTTGACCGATTGGG 26808 Query 67911 TAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAA 67970 || || ||||| || || | ||||| | |||||||||||| ||||||| |||||||| Sbjct 26809 TATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAATGCTACGAAGATCCAA 26868 Query 67971 GGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCG 68030 ||||||||||| | |||||| | |||||| | |||||| ||| || | || Sbjct 26869 GGACGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCCATGTAACTTGCAACACCT 26928 Query 68031 ATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGA 68090 | | |||||| || || | | |||| |||| ||||| || || ||||||||||| | Sbjct 26929 AATAAGAAGTGTAAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCAACT 26988 Query 68091 GTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACA 68150 | |||||||||||||| || |||||||| | ||| || |||||||||||||| | ||| Sbjct 26989 GAAGCTGCTTCCCAGATTGGGTAGAAGTGCATACCAATAGCGTTTGAACTAGGGATAACT 27048 Query 68151 GCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCA 68210 ||||| || ||||||||||||||||| | | |||||||| || ||||| | ||||||| Sbjct 27049 GCACCTGAGATGATGTTGTTACCGTATAATAAAGAACCTGCTACTGGTTCACGGATACCA 27108 Query 68211 TCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGC 68270 |||||||| |||||||| ||||| || || || |||||||| |||| | |||| | Sbjct 27109 TCGATATCTACTGGAGGAGCTGCGATAAAAGCGATGATGAAACAAGAAGTAGCTGTTAAT 27168 Query 68271 AAGCAAGGAATCATCAACACACCGAACCAACC 68302 || |||||| ||| || ||| |||||||| Sbjct 27169 AATAAAGGAAACATTAAACAACCAAACCAACC 27200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566586536538720