Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq50892 154 4e-32 seq43102 154 4e-32 seq14215 84.2 6e-11 >seq50892 Length=141790 Score = 154 bits (170), Expect = 4e-32 Identities = 339/493 (69%), Gaps = 20/493 (4%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | |||| || |||||| | ||||| || || | | ||||| || | Sbjct 2219 ATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGCA-C 2161 Query 288912 CAATACAACAAT---AGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 ||| ||||||| | || ||| ||||| |||||||| |||||| | |||||| Sbjct 2160 CAA--CAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 2103 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 |||||||| || | |||||| ||| ||| | | |||| | | | | || | | Sbjct 2102 TAGTGTTTGCTCACGTTCATCGTTTCCACCACC---AACACCAGCACCACG---TTCTCT 2049 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| || ||||||||||| ||||| |||| | ||| || | ||||| | || || Sbjct 2048 ACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTG 1989 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| |||| || |||| || |||| || | | |||| || |||||||||||| | Sbjct 1988 GAATAAATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAATTCAGAACC 1929 Query 289149 GGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || |||| || | |||| |||||| ||| | || | || | | || | Sbjct 1928 CGCAACGCTGAA-AAACGGAACATCTGCTTCATTTGCAATAGCTTTTGCTAATAAAGTTT 1870 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGAC 289266 | || |||||||| || || |||||| || ||||||| || | ||| || ||| || || Sbjct 1869 TTCCAGTTCCAGGAGGGCCAACTAATA-AAATCCCTTTAGGAATTTTAGCACCAACA-AC 1812 Query 289267 T-TATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | ||||||| ||| ||||| |||||||| |||||||| |||| |||| |||||| | Sbjct 1811 TGTATATTTTTCA-GGCTCTTTTAAAAAAGAGACAATTTCTTCAAATTCAGCTTTTGCTT 1753 Query 289325 CATCACATCCTGC 289337 | ||| ||| || Sbjct 1752 CGTCAATTCCAGC 1740 >seq43102 Length=56976 Score = 154 bits (170), Expect = 4e-32 Identities = 339/493 (69%), Gaps = 20/493 (4%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | |||| || |||||| | ||||| || || | | ||||| || | Sbjct 8790 ATCAAATCGTCCAGGTCGTAATAATGCAGCATCTAAAATGTCTACACGATTTGTAGCA-C 8848 Query 288912 CAATACAACAAT---AGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 ||| ||||||| | || ||| ||||| |||||||| |||||| | |||||| Sbjct 8849 CAA--CAACAATTACACCTTTATTTTCTTTAAAACCATCCATTTCTGTTAATAGTTGATT 8906 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 |||||||| || | |||||| ||| ||| | | |||| | | | | || | | Sbjct 8907 TAGTGTTTGCTCACGTTCATCGTTTCCACCACC---AACACCAGCACCACG---TTCTCT 8960 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| || ||||||||||| ||||| |||| | ||| || | ||||| | || || Sbjct 8961 ACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGCGCATTTTCTGAAGCCTTTTG 9020 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| |||| || |||| || |||| || | | |||| || |||||||||||| | Sbjct 9021 GAATAAATCTCGAACTCGGGCAGCACCAATCCCGATAAACATCTCCACAAATTCAGAACC 9080 Query 289149 GGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 | || |||| || | |||| |||||| ||| | || | || | | || | Sbjct 9081 CGCAACGCTGAA-AAACGGAACATCTGCTTCATTTGCAATAGCTTTTGCTAATAAAGTTT 9139 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGAC 289266 | || |||||||| || || |||||| || ||||||| || | ||| || ||| || || Sbjct 9140 TTCCAGTTCCAGGAGGGCCAACTAATA-AAATCCCTTTAGGAATTTTAGCACCAACA-AC 9197 Query 289267 T-TATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | ||||||| ||| ||||| |||||||| |||||||| |||| |||| |||||| | Sbjct 9198 TGTATATTTTTCA-GGCTCTTTTAAAAAAGAGACAATTTCTTCAAATTCAGCTTTTGCTT 9256 Query 289325 CATCACATCCTGC 289337 | ||| ||| || Sbjct 9257 CGTCAATTCCAGC 9269 >seq14215 Length=7273 Score = 84.2 bits (92), Expect = 6e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 |||||||||||| ||||||||| || | |||| | || |||| ||| | || ||| Sbjct 3126 AAAGTGTGGCAGCGTCCTGTTCACAAATCCGTCCTGTATTCGCTGTCCTCCGACAGCCTG 3185 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATT 302870 ||| || | ||| | ||||||||||| || || || |||||||||||||||| |||| Sbjct 3186 CTGGCCAACGCATGCCATCATCTGCGAGATGTTCAACGGACTGCCCTTGGAGCCA-CATT 3244 Query 302871 -TACCATAAT 302879 | |||| || Sbjct 3245 CTGCCATTAT 3254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470857895814604