Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18597 127 2e-24 seq18371 120 3e-22 seq10981 116 3e-21 seq33104 107 2e-18 seq3706 93.3 4e-14 >seq18597 Length=5183 Score = 127 bits (140), Expect = 2e-24 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || ||||| || || || || || || || || | | Sbjct 3076 ATGCAGATCTTTGTTAAGACCCTGACCGGGAAGACGATCACCCTTGACGTTGAGCCGTCG 3017 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || |||||||| ||||| || || || || || ||||| Sbjct 3016 GACACGATCGACAACGTCAAGAC-GAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 2958 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| |||| || |||||||| ||||| |||||| | | | | || || || || Sbjct 2957 ACAGCGTCTGATTTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAA 2898 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 ||| || ||||| ||||| || ||||||||| | || | || || | | ||||||| Sbjct 2897 CATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTCCGTGGTG--GAAACTGAG 2842 >seq18371 Length=23815 Score = 120 bits (132), Expect = 3e-22 Identities = 138/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACAAAAGATCCA 24795 || || |||||||| || || | | ||||||| | || |||| || ||||| |||||| Sbjct 23609 ACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAA-GATCCA 23667 Query 24796 AGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 ||||| || || || || || |||||||| | ||||||| ||||| ||||| || || Sbjct 23668 GGACAAGGAGGGGATCCCGCCGGATCAACAGAGACTGATCTTCGCCGGAAAACAACTTGA 23727 Query 24856 GGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||| | | | | || ||||| |||||||| ||||||||||| || || ||||| || Sbjct 23728 GGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTT 23787 Query 24916 GCG 24918 ||| Sbjct 23788 GCG 23790 >seq10981 Length=11828 Score = 116 bits (128), Expect = 3e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACAAAAGATCCA 24795 || || |||||||| || || | | ||||||| | || |||| || ||||| |||||| Sbjct 2209 ACGATCACGCTCGATGTCGAGCCAAGCGACACAATTGACAACGTCAAGACAAA-GATCCA 2267 Query 24796 AGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 ||||| || || || || || |||||||| | ||||||| ||||| || || || || Sbjct 2268 GGACAAGGAGGGGATCCCGCCAGATCAACAGAGACTGATCTTCGCCGGAAAGCAACTTGA 2327 Query 24856 GGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||| | | | | || ||||| |||||||| ||||||||||| || || ||||| || Sbjct 2328 GGATGGACGCACCTTATCGGATTACAACATTCAGAAGGAATCGACGCTCCATTTGGTCTT 2387 Query 24916 GCG 24918 ||| Sbjct 2388 GCG 2390 >seq33104 Length=5523 Score = 107 bits (118), Expect = 2e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAAACAAAAGATCCA 24795 || || |||||||| || || | | |||||| | || || | ||| ||||| |||||| Sbjct 3064 ACGATAACGCTCGATGTCGAGCCAAGTGACACAATTGACAATGTTAAGACAAA-GATCCA 3122 Query 24796 AGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGA 24855 || || ||||| || || || |||||||| | ||||| ||||| || || |||||||| Sbjct 3123 GGATAAGGAAGGCATTCCACCGGATCAACAGAGGTTGATTTTTGCGGGAAAGCAGCTGGA 3182 Query 24856 GGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||| | | | || |||||||| || || ||||| ||||| || ||| |||| || Sbjct 3183 GGATGGCCGTACACTTTCTGATTATAATATCCAGAAGGAGTCGACGCTCCACCTGGTCTT 3242 Query 24916 GCG 24918 ||| Sbjct 3243 GCG 3245 >seq3706 Length=3511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/224 (70%), Gaps = 14/224 (6%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| ||||||| || ||||| || || || || ||||| || || | | Sbjct 3295 GATGCAGATCTTTGTTAAAACCCTGACCGGGAAGACGATCACCCTCGACGTCGAGCCGTC 3236 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAA---------AGAAGGAATAC 24812 || || | || |||| || || |||||||| ||||| | || || | Sbjct 3235 GGATACGATTGACAACGTCAAGAC-TAAGATCCAGGACAAGGGGGGCACATGGGGCATCC 3177 Query 24813 CTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA-TTCGA--GAAACA 24869 | || |||||||| ||| |||| |||| |||||| |||| ||||| ||| | | | Sbjct 3176 CCCCTGATCAACAGCGTCTGATTTTTGGCGGGAAGTAGCTCGAGGACGGCGACCGCACCC 3117 Query 24870 TGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | || || || ||||| || ||||| | ||| || ||||||||| Sbjct 3116 TTTCGGACTACAACATCCAGAAGGAGTTGACCCTCCACTTGGTG 3073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449611397641760