Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18597 125 5e-24 seq10981 113 3e-20 seq18371 104 2e-17 seq9453 91.5 1e-13 >seq18597 Length=5183 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 2865 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 2924 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| || || || || | || | ||||||||||| Sbjct 2925 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 2984 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | ||| || |||| ||| || ||| Sbjct 2985 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCAACGTCAAGGGTGATCGTC 3044 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||||||||| Sbjct 3045 TTCCCGGTCAGGGTCTTAACAAAGATCTGCAT 3076 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| |||||||| ||| |||| | || Sbjct 3093 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 3152 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| || || || || | || | ||||||||||| Sbjct 3153 TCGAGCTGCTTCCCGGCGAAAATCAGACGCTGTTGATCAGGGGGGATACCCTCCTTGTCC 3212 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| |||| ||| || ||| Sbjct 3213 TGGATCTTCGTCTTGACGTTGTCGATCGTGTCCGACGGCTCGACGTCAAGGGTGATCGTC 3272 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 || || || |||||||| || || ||||||| Sbjct 3273 TTCCCGGTCAGGGTCTTGACGAAAATCTGCA 3303 >seq10981 Length=11828 Score = 113 bits (124), Expect = 3e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| || ||||||| | |||| |||| || |||||||||||||||||| Sbjct 2366 TCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATCCTCAAGTTGCTTTCCGGCGAAG 2307 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG 34903 ||||||| || || ||| |||| | |||||||||||| | || ||| |||||| Sbjct 2306 ATCAGTCTCTGTTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGTCTTGACG 2250 >seq18371 Length=23815 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| || ||||||| | |||| |||| || ||||| |||||||||||| Sbjct 23766 TCCTTCTGAATGTTGTAATCCGATAAGGTGCGTCCATCCTCAAGTTGTTTTCCGGCGAAG 23707 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG 34903 ||||||| || || || |||| | |||||||||||| | || ||| |||||| Sbjct 23706 ATCAGTCTCTGTTGATCCGGCGGGATCCCCTCCTTGTCCTGGATCTTTGTCTTGACG 23650 >seq9453 Length=4450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| |||||||| ||| | || | || Sbjct 1107 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCC 1048 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || || || || | || | ||||||||||| Sbjct 1047 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGTTGATCCGGGGGGATGCCCTCCTTGTCC 988 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || || ||||||||| | ||| ||||| Sbjct 987 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTT 928 Query 34946 TTTCCCGT 34953 || || || Sbjct 927 TTGCCTGT 920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325490790262148