Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq50892 205 7e-47 seq43102 205 7e-47 >seq50892 Length=141790 Score = 205 bits (226), Expect = 7e-47 Identities = 362/526 (69%), Gaps = 19/526 (4%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||||||| || | ||||| ||| | ||||||||| ||||||||||| || Sbjct 100572 GCAGTCACTGATAGTAAACCATCAACATTAATATCAAATGTCACTTCAATTTGTGGACGA 100631 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||| | |||| || || ||||| || ||||| |||| ||| | ||||| | || Sbjct 100632 CCTTTTGGAGCTTCAGGAATTCCTTCTAATTTAAAATTTCCTAGACTCTTATTTCCACTA 100691 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 | || || ||| || | || | || || ||| ||||| ||||||| Sbjct 100692 ACAATTTCTCTTTCTCCTTGTAATACATGAATTTCAACGTTTGTTTGGTTATCTGCTGCG 100751 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 |||| ||||| | ||||||||| |||||||||||| |||| | |||||| || ||| Sbjct 100752 GTTGAAAATAATTCTGATTTTTTAACAGGAATTGTTGTATTTCGAGCAATAAGTTTTGTC 100811 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 ||||||||||| ||||||| | |||||| || | ||||| ||||| | || | |||| Sbjct 100812 ATAATACCACCTACTGTTTCGACACCAAGTGATAATGGAGTAACATCTAATAATAAAATA 100871 Query 281726 T-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | | ||| ||| ||| | | |||| | ||||||||||| |||||| Sbjct 100872 TCTGTGA-------------TTTCACCTGCTAAAATACCGGCTTGAATAGCTGCACCAAT 100918 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 ||| ||| ||||||| ||||| || | || |||| ||||||| ||| | ||| | |||| Sbjct 100919 TGCGACAACTTCATCTGGATTTACTGATTTATTTGGTTTTTTTCCAGTTAAAGA--TTGA 100976 Query 281845 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 | || | | | || || |||||||||| ||| || || ||||| || | ||||| | Sbjct 100977 ACTAATTCTTGTATAGCT--GGAATACGAGTTGAACCACCTACTAAAACGACTTCATTAA 101034 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| ||| | ||||| ||| |||| |||||||||| || Sbjct 101035 TTCCAGATTGATCTAATTTTGCATCTTTTAAAGCTTTTTCAACCGG 101080 Score = 143 bits (158), Expect = 2e-28 Identities = 284/415 (68%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 ||||||||| | |||| |||| ||||||||||| ||| || | |||||| Sbjct 101280 AAATCTGTTCCTTCTTTTGTCTTAAAATCTTCAACTAGCCAGCGCACTAATGCTTTATCA 101339 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 ||||| ||||| |||| || |||| || | || | | ||| | || | ||||| Sbjct 101340 AAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCATCA 101399 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 | | |||| | ||||||| || |||||||| | |||||||| | | ||| Sbjct 101400 CCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTA--AAATTG 101457 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 | || || ||| || ||||| | ||||| || || | ||| || |||||||||||| Sbjct 101458 -TCTCATT---TTGTTTCTTATCTAACCCATAAGCTAATGAAGCTGCTGTTGGTTCATTA 101513 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 ||||||| | ||| | || |||||||||| | |||||||| || || || | ||| Sbjct 101514 ATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTGTTGCCTGACGTTGA 101573 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 || || ||||||||||| || |||||||| || || | || || |||| ||| | ||| Sbjct 101574 GAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTAGTCACATCTTGTCCTAAGTAA 101633 Query 282497 GCGCTTGC-TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | |||| | | || ||||| || | || || ||| |||| ||||||| Sbjct 101634 TCTTTTGCATCAGTAATTAATTTT-CTAATAACTTGTGCTGAGATTTCTTCTGGA 101687 Score = 122 bits (134), Expect = 7e-22 Identities = 206/293 (70%), Gaps = 19/293 (6%) Strand=Plus/Plus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATGTTCTAAATACTCCA 86019 |||||||| || || |||| || ||||| ||| || || ||| ||||| ||| Sbjct 101337 TCAAAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCA 101396 Query 86020 TTTGAGATA-TTCATTAAC-GAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTA 86077 | | || ||| ||| |||||||| ||||||||| | ||||| ||| |||| | | Sbjct 101397 TC--ACCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTAAAA 101454 Query 86078 CGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTG 86137 || | | | ||| ||| || || |||| || || || | | |||| Sbjct 101455 --TTGTCTC-ATTTTGTTTCTT--AT----------CTAACCCATAAGCTAATGAAGCTG 101499 Query 86138 CAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAG 86197 | |||||||||||||| ||| ||||| || | ||| ||||||||| | | ||||| | Sbjct 101500 CTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTG 101559 Query 86198 TTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTA 86250 |||| || | || | ||||||||||||||||||||||||||| ||||||||| Sbjct 101560 TTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTA 101612 >seq43102 Length=56976 Score = 205 bits (226), Expect = 7e-47 Identities = 362/526 (69%), Gaps = 19/526 (4%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||||||| || | ||||| ||| | ||||||||| ||||||||||| || Sbjct 52229 GCAGTCACTGATAGTAAACCATCAACATTAATATCAAATGTCACTTCAATTTGTGGACGA 52170 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||| | |||| || || ||||| || ||||| |||| ||| | ||||| | || Sbjct 52169 CCTTTTGGAGCTTCAGGAATTCCTTCTAATTTAAAATTTCCTAGACTCTTATTTCCACTA 52110 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 | || || ||| || | || | || || ||| ||||| ||||||| Sbjct 52109 ACAATTTCTCTTTCTCCTTGTAATACATGAATTTCAACGTTTGTTTGGTTATCTGCTGCG 52050 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 |||| ||||| | ||||||||| |||||||||||| |||| | |||||| || ||| Sbjct 52049 GTTGAAAATAATTCTGATTTTTTAACAGGAATTGTTGTATTTCGAGCAATAAGTTTTGTC 51990 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 ||||||||||| ||||||| | |||||| || | ||||| ||||| | || | |||| Sbjct 51989 ATAATACCACCTACTGTTTCGACACCAAGTGATAATGGAGTAACATCTAATAATAAAATA 51930 Query 281726 T-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | | ||| ||| ||| | | |||| | ||||||||||| |||||| Sbjct 51929 TCTGTGA-------------TTTCACCTGCTAAAATACCGGCTTGAATAGCTGCACCAAT 51883 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGA 281844 ||| ||| ||||||| ||||| || | || |||| ||||||| ||| | ||| | |||| Sbjct 51882 TGCGACAACTTCATCTGGATTTACTGATTTATTTGGTTTTTTTCCAGTTAAAGA--TTGA 51825 Query 281845 AAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 | || | | | || || |||||||||| ||| || || ||||| || | ||||| | Sbjct 51824 ACTAATTCTTGTATAGCT--GGAATACGAGTTGAACCACCTACTAAAACGACTTCATTAA 51767 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| ||| | ||||| ||| |||| |||||||||| || Sbjct 51766 TTCCAGATTGATCTAATTTTGCATCTTTTAAAGCTTTTTCAACCGG 51721 Score = 143 bits (158), Expect = 2e-28 Identities = 284/415 (68%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 ||||||||| | |||| |||| ||||||||||| ||| || | |||||| Sbjct 51521 AAATCTGTTCCTTCTTTTGTCTTAAAATCTTCAACTAGCCAGCGCACTAATGCTTTATCA 51462 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 ||||| ||||| |||| || |||| || | || | | ||| | || | ||||| Sbjct 51461 AAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCATCA 51402 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 | | |||| | ||||||| || |||||||| | |||||||| | | ||| Sbjct 51401 CCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTA--AAATTG 51344 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 | || || ||| || ||||| | ||||| || || | ||| || |||||||||||| Sbjct 51343 -TCTCATT---TTGTTTCTTATCTAACCCATAAGCTAATGAAGCTGCTGTTGGTTCATTA 51288 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 ||||||| | ||| | || |||||||||| | |||||||| || || || | ||| Sbjct 51287 ATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTGTTGCCTGACGTTGA 51228 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 || || ||||||||||| || |||||||| || || | || || |||| ||| | ||| Sbjct 51227 GAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTAGTCACATCTTGTCCTAAGTAA 51168 Query 282497 GCGCTTGC-TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | |||| | | || ||||| || | || || ||| |||| ||||||| Sbjct 51167 TCTTTTGCATCAGTAATTAATTTT-CTAATAACTTGTGCTGAGATTTCTTCTGGA 51114 Score = 122 bits (134), Expect = 7e-22 Identities = 206/293 (70%), Gaps = 19/293 (6%) Strand=Plus/Minus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATGTTCTAAATACTCCA 86019 |||||||| || || |||| || ||||| ||| || || ||| ||||| ||| Sbjct 51464 TCAAAATCGTCACCACCCAGATTTGTATCGCCAGCTGTTGATAATACCTCAAATATACCA 51405 Query 86020 TTTGAGATA-TTCATTAAC-GAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTA 86077 | | || ||| ||| |||||||| ||||||||| | ||||| ||| |||| | | Sbjct 51404 TC--ACCTACTTCTAAAACTGAAACATCAAATGTCCCACCACCTAAATCAAAAACTAAAA 51347 Query 86078 CGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTG 86137 || | | | ||| ||| || || |||| || || || | | |||| Sbjct 51346 --TTGTCTC-ATTTTGTTTCTT--AT----------CTAACCCATAAGCTAATGAAGCTG 51302 Query 86138 CAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAG 86197 | |||||||||||||| ||| ||||| || | ||| ||||||||| | | ||||| | Sbjct 51301 CTGTTGGTTCATTAATAATTCGTAGAACTTCAATACCAGCAATTTTACCTGCATCAACTG 51242 Query 86198 TTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTA 86250 |||| || | || | ||||||||||||||||||||||||||| ||||||||| Sbjct 51241 TTGCCTGACGTTGAGAGTCATTAAAATATGCTGGTACAGTAATTACTGCTTTA 51189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738131817869592